Azonexus hydrophilus: AADV58_15335
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Entry
AADV58_15335 CDS
T10592
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ahv Azonexus hydrophilus
Brite
KEGG Orthology (KO) [BR:
ahv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahv03019
]
AADV58_15335 (hrpA)
Enzymes [BR:
ahv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AADV58_15335 (hrpA)
Messenger RNA biogenesis [BR:
ahv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AADV58_15335 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
nSTAND_NTPase5
AAA_25
NACHT
PhoH
AAA_23
TsaE
Motif
Other DBs
NCBI-ProteinID:
WZJ21304
UniProt:
A0ABZ2XF97
LinkDB
All DBs
Position
complement(3156032..3159976)
Genome browser
AA seq
1314 aa
AA seq
DB search
MSAHTRKPASRDDVSLTTLSADARRLRALQRELPRSAGDQRQKLQADLEKLLAASQAAVA
ERRGKLPRPEFQPDLPVNERRDEIAKLIAKHQVVIVCGETGSGKTTQLPKICLDLGIGAR
GLIGHTQPRRLAARSVATRLAQELKTQVGAGVGVKIRFHDKSTPESWVKLMTDGILLAES
QSDPYLNAYEAIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKLIITSATIDAERFSQHFN
GAPVIEVSGRLYPVEVRHRPVEDIDKKDDERDLYDAIVDAADELARLGSGDILVFLPGER
EIREAAEALRKHALARPGLSTAHAPEILPLFSRLSAGEQDRIFKPSGGQRRIVLATNVAE
TSLTVPGIRYVIDTGLARVKRYSYRNKVEQLQVEKISQAAARQRAGRCGRVAAGVCIRLY
DEADFNARPPFTDPEILRSSLAGVILRMKSLRLTDVESFPFIEPPPAKAISDGYALLQEL
GALDDDNKLTKVGEALAKLPLDPRIGRMLVAARDLGCLSEVLVIAAGLSTQDPRERPQER
QQAADEKHKLFADEKSEFLSWVKLWQWFQNAVEHKKSNKSLVDTCHAHFLSYLRLREWRE
VHGQLHAMVAELGWKENDIPGIYDAIHMALLSGLLGNIGCKSDESGYYLGARGIRFLIHP
SSPLQKKAGKWIMAAEITETTRLFGRCIARIEDAWIEKVGAHLIKRQYFDPHWEKKAMQV
AGWERTTLYGIVINPKRRIHYGPLAPVEAREIFIRQGLVGEEIEESFAKRWPFFQHNQKQ
IREIEKIEHKQRRQDVLVDDELIFAFYDHLIPEDIHNGATFDHWRKTAEQDNPKLLFLAK
DDLMRHSAAGVTTEAFPHKLKAGAVEYALTYHFEPGSPRDGVTLTLPLAQLNQIPAARME
WLVPGLIKEKLVQLIKTLPQKIRAKLVPVPEFVEEFLAAVEGNDRKLNQGIINPLIEFIL
EARGLNARGWAVTPDAFRPDALPPHFSMNYKLIDEHGRQLDMNRSLVALRGEWGKEAKEE
FAELHETPSEYTQLTDWTFGELPELMEVPVGKQTVIGYPALIDDGETVSLKVFDSAEEAA
DAHRKGLSRLFMLQFKEQVKYFDKNVPGLTQMAMQFMALGSSDDLKRQIVELTFERACLS
EPLPTTPEAFKARCAEAKARLGLIMQEVCRLVGTVLTEWQAVVKKLPAFKAQAAVVADIE
AQLKRLIGKTFVVDTPFERLQHYPRYFKAIGVRLDKLKANPARDAQLMAEYAPLWTNYER
RAIQLAKMGAVDPQVEQFRWLLEELRVGLYAQELRTPVPVSVKRLQKQWEGIGR
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctcacacccgcaagcccgcctcgcgcgacgacgtctccctgaccaccctgagc
gccgatgcgcgccgcctgcgggccttgcagcgcgaactgccacgctcggccggcgaccag
cggcaaaaactgcaggccgacctggaaaaactgctcgccgcctcgcaggccgccgtcgcc
gaacggcgcggcaagttgccgaggccggaattccagcccgacctgccggtcaacgaacgg
cgcgacgagattgccaagctgatcgccaagcatcaggtggtcatcgtctgcggcgagacc
ggctcgggtaagaccacgcagttgccgaagatctgcctcgatcttggcatcggcgcgcgc
ggcctgatcggccacacgcagccgcgccggctggctgcccgttcggtggcgacgcgcctg
gcgcaggaactgaagacccaggttggcgctggcgtcggcgtgaaaatccgcttccacgat
aaatcgacgccggagagctgggtcaagctgatgaccgacggcatcctgctcgccgaatca
caaagcgacccgtacctgaacgcctacgaggcgatcatcatcgacgaggcgcacgagcgc
agcctgaacatcgacttcctgctcggctacctgaagcagttgctgccgcgccggccggac
ctgaagctgatcatcacctcggcgaccattgatgccgagcgcttctcgcagcatttcaac
ggcgcgccggtgatcgaggtatccggccgcctgtacccggtcgaggtgcgtcatcgtccg
gtcgaggacatcgacaagaaggacgacgagcgcgacctctacgatgccattgtcgatgcc
gccgacgaactggcccgcctgggttccggcgacatcctcgtcttcctgcctggtgagcgc
gaaatccgcgaggcggcagaggccttgcgcaagcatgccctggctcgtccgggcttgagc
accgcgcacgcaccggaaatcctgccgctgttctcgcgcctgtcggccggcgagcaggac
cgcatcttcaagccctcgggcggccagcggcgcatcgtgctggccaccaacgtcgctgaa
acctcgctcaccgtgccgggcatccgctacgtcatcgacaccggtctggcgcgggtcaag
cgctattcctaccgcaacaaggtcgagcagttgcaggtcgagaagatttcgcaggcggcg
gcgcgccagcgcgccggccgttgcggccgcgtcgccgccggcgtgtgcatccgcctctac
gacgaggccgatttcaacgcgcggccgccgttcaccgacccggaaatcctgcgttcctcg
ttggccggcgtcatcctgcgcatgaagtcgctgcgcctgaccgatgtcgagagcttcccc
ttcatcgagccgccgccggcaaaggcgatcagcgatggttacgcgctgttgcaggaactc
ggcgcgctcgacgacgataacaagctgaccaaggtcggcgaagcgttggcgaaactgccg
ctcgatccgcgcatcggccgcatgctggtcgccgcgcgcgatctcggttgtctgagcgaa
gtgctggtcatcgccgccgggctgtccacgcaggatccgcgcgagcggccgcaggagcgg
cagcaggcggcggacgaaaagcacaagctgttcgccgacgagaagtcggagttcctgagt
tgggtcaaactctggcagtggttccagaacgccgtcgagcacaagaaatcgaacaagtcg
ctggtcgatacctgccacgcgcacttcctttcctacctgcggctgcgcgaatggcgcgag
gtgcatgggcagttgcatgcgatggtcgccgagctgggctggaaggaaaacgatatcccc
ggcatctacgacgccatccacatggcgctgctgtccgggctgttgggcaatattggctgc
aagtcggacgaatccggttactacctcggcgcgcgcggtatccgcttcctgatccatccg
tcgtcgccgctgcagaagaaggccggcaagtggatcatggccgccgagatcaccgagacg
acgcgcctcttcggccgctgcatcgcccgcatcgaggatgcctggatcgagaaagtgggc
gctcacttgatcaagcgccagtacttcgatccgcattgggaaaagaaggcgatgcaggtc
gccggctgggaacggacgacgctctacgggatcgtcatcaacccgaagcggcgcatccat
tacggcccgctggcaccggtcgaggcgcgcgagatcttcatccgccagggactggtcggc
gaggagatcgaggagtcgtttgcgaagagatggcccttcttccagcacaaccagaagcag
attcgcgagatcgagaagatcgagcacaagcagcgccggcaggacgtgctggtcgacgac
gagctgatcttcgccttctacgaccacctgatcccggaagacatccacaacggcgccacc
ttcgaccactggcgcaagaccgccgagcaggacaacccgaagctgctcttcctggccaag
gacgacctgatgcgccattcggcggccggcgtcaccaccgaggccttcccgcacaagctc
aaggccggcgctgtggagtacgcgctcacttatcacttcgagccgggctcgccgagggat
ggcgtcacgctgacgctgccgctggcgcaactcaaccagattccggcggcgcgcatggaa
tggctggtgccggggctgatcaaggaaaagctggtgcagttgatcaagacgctgccgcag
aaaatccgcgccaagctggtgccggtgccggaattcgtcgaggagttcctggccgctgtc
gaaggcaacgatcgcaagctcaaccagggcatcatcaacccgctgatcgaattcatcctc
gaagcgcgcggactgaacgcgcgcggctgggcggtgacgcccgacgccttccgccccgac
gcgctgccaccgcacttctcgatgaactacaagctgatcgacgaacacggccggcaactc
gacatgaaccgcagcctggtcgcgctgcgcggcgaatggggcaaggaagccaaggaggaa
ttcgccgaactgcacgaaacgccgtccgaatacacccaactgaccgactggaccttcggc
gagttgccggaactgatggaagtgccggtcggcaaacaaaccgtgatcggctacccggcg
ctgatcgacgacggcgaaacggtcagtctgaaagtcttcgattccgccgaagaagccgcc
gacgcgcaccgcaaaggtttgtcgcggctgttcatgctgcagttcaaggagcaggtgaag
tacttcgacaagaacgtccccggcctgacccagatggcgatgcagttcatggcgctgggc
agcagcgacgacctgaagcggcagattgtcgaattgacgttcgaacgcgcctgcctgagc
gagccgctgccgaccacgccggaggccttcaaggcgcgttgtgccgaggccaaggcgcgg
cttgggctgatcatgcaggaagtctgccgcctggttggcaccgtgctgaccgaatggcag
gcagtggtcaagaagttgccggcgttcaaggcgcaggcggcggtcgtcgccgacatcgaa
gcgcaactgaagcggctgatcggcaagaccttcgtcgtcgatacgccgttcgagcgtctg
cagcattacccgcgctatttcaaggcgatcggtgtgcggctcgacaagctcaaggccaat
ccggcgcgtgacgcccagttgatggccgagtacgcgccgttgtggaccaattacgaacgc
cgcgcgatccagctggcgaagatgggcgcggtcgatccgcaggtcgagcagttccgctgg
ctgctggaagagttgcgcgtcggcctctacgcgcaggagttgcgtacgccggtaccggtg
tcggtgaagcgactgcagaaacagtgggaaggaattgggcgctga
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