Actinomyces howellii: NCTC11636_00048
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Entry
NCTC11636_00048 CDS
T06068
Name
(GenBank) Putative ribonuclease J Rv2752c
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ahw
Actinomyces howellii
Pathway
ahw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11636_00048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahw03019
]
NCTC11636_00048
Messenger RNA biogenesis [BR:
ahw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC11636_00048
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
VEG25463
UniProt:
A0A3S4SL46
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All DBs
Position
1:44152..45837
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AA seq
561 aa
AA seq
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MTNFPVLKAPGPIPDGAMRIVPLGGLGEVGRNMTVYEVDGKLLIIDCGVLFPEEDQPGVD
LILPDFSYIEDRLDDVVAMVLTHGHEDHIGGVPYLLRLRPDIPLVGSELTLAFVDAKLKE
HRIRPVLRVVSEHEEVAYGPFDLEFVAVNHSIPDAMAVFVRTEVGNVLATGDFKMDSLPI
DGRITDLRSFARFGEEGVDLFCVDSTNAEVPGMVGHENEIGQVLDTVFAESDQQIIVASF
ASHVHRVQQVLDAASYHGRRVALIGRSMVRNMGIAAERGYLKVPDGVLVDARDVTSLPAD
ERVLMVTGSQGEPMAALSRMAHGEHRSVTVEPGDTVIFASSLIPGNENSVFRVINQLMRL
GARVVHQGNAKVHVSGHASSEELLHVYNIVQPSNVMPIHGEIRHLVANGALAVKTGIDPT
RVVLCEDGVVVDLLDGRASIAGSVPCGYVYVDGSSVGEIDEAELKDRRILAEEGFVSIYA
VVETKTGTILAGPDIQARGVAEDDSVFDEILPEVTTALSEAMSTGKADAHSLQQVMRRTV
GRWIGRRLRRRPMIVPVVIEA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaacttccccgtgctcaaggctcccggaccgatccccgacggcgcgatgcgcatc
gtcccgctgggcggcctgggcgaggtcggtcgcaacatgaccgtctacgaggtcgacggc
aagctgctcatcatcgactgcggcgtcctgttccccgaggaggaccagcccggcgtcgac
ctcatcctcccggacttcagctacatcgaggaccgcctcgacgacgtcgtcgccatggtc
ctgacccacggccacgaggaccacatcggcggggtgccctacctgctgcgcctgcgcccc
gacatccctctggtcggctccgagctcaccctggccttcgtcgacgccaagctcaaggag
cacaggatccgtccggtcctgcgtgtcgtctccgagcacgaggaggtcgcctacggcccc
ttcgacctggagttcgtcgcggtcaaccactccatccccgacgcgatggcggtcttcgtg
cgcaccgaggtgggcaacgtcctggccaccggcgacttcaagatggactccctgcccatt
gacggcaggatcaccgacctgcgctccttcgcccgcttcggtgaggagggggtcgacctg
ttctgcgtcgactccaccaacgccgaggtccccgggatggtggggcacgagaacgagatc
gggcaggttctcgacaccgtcttcgccgagtccgaccagcagatcatcgtcgcctccttc
gccagccacgtccaccgcgtccagcaggtcctcgacgccgcctcctaccacggcaggcgg
gtggcgctcatcggccggtcgatggtccgcaacatgggcatcgccgccgagcgcggctac
ctcaaggtgcctgacggcgtgctcgtcgacgcccgcgacgtcacgtcccttcccgccgac
gagcgcgtcctcatggtcaccggctcccagggcgagccgatggcggcactgtcccggatg
gcgcacggggagcaccgatcggtgaccgtcgagccgggggacaccgtcatcttcgcctcc
tcgctcatccccggcaacgagaactccgtgttccgcgtcatcaaccagctcatgcgcctg
ggcgcgcgcgtggtccaccagggcaacgccaaggtccacgtctcggggcacgcctcctcc
gaggagctcctccacgtctacaacatcgtccagccctccaacgtcatgcccatccacggc
gagatccgccacctcgtggccaacggcgcactggcggtcaagaccggcatcgaccccacg
cgcgtcgtgctgtgcgaggacggcgtcgtcgtcgacctcctcgacggcagggcctccatc
gccggctcggtcccctgcggctacgtctacgtcgacggctcctcggtcggggagatcgac
gaggccgagctcaaggaccgacgcatcctggctgaggagggcttcgtgtccatctacgcg
gtggtggagaccaagaccgggaccatcctggccggcccggacatccaggcccggggcgtg
gcggaggacgactcggtcttcgacgagatcctgcccgaggtgaccaccgccctgtccgag
gcgatgtccaccggcaaggccgacgcccactccctccagcaggtcatgcgccgcacggtg
ggcaggtggatcggacgacggctgcggcgccgcccgatgatcgtgcccgtggtcatcgag
gcctga
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