Arcanobacterium hippocoleae: RQN30_00820
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Entry
RQN30_00820 CDS
T10229
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ahx Arcanobacterium hippocoleae
Pathway
ahx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RQN30_00820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahx03019
]
RQN30_00820
03009 Ribosome biogenesis [BR:
ahx03009
]
RQN30_00820
Enzymes [BR:
ahx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RQN30_00820
Messenger RNA biogenesis [BR:
ahx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RQN30_00820
Ribosome biogenesis [BR:
ahx03009
]
Prokaryotic type
rRNA helicases
RQN30_00820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XCB30044
LinkDB
All DBs
Position
complement(155899..157923)
Genome browser
AA seq
674 aa
AA seq
DB search
MSENIISFSELGLPENLLQAITDLGFKTPTPIQAKAIPALLNQRDVVGVAQTGTGKTAAF
GLPMLTHVDPNEKCVQALILAPTRELALQGADAISTFASKTAELNVVAVYGGSAYGPQLN
ALKNGAQVVVGTPGRIMDLMDRGALKLDKVRYFVLDEADEMLRMGFAEDVEKIAGELPSM
RISALFSATMPSSIRKIATEHLQDPLEITVTPAASTVDTIAQTFAVVPNRHKIGALSRVL
ATTEAEAALVFVRTRATAEELSLELTARGVHAAALSGDVAQVEREKLVNRLRSGFLDVLV
ATDVAARGLDVERIGLVVNFDVPREVDTYVHRIGRTGRAGREGTALTFVTPKERSRLRKI
EAVTKSSMIQVDLPTPAEVSAYRSQKLIEQAEARFAAGRLWVYADVLAKYEADSDETADL
QTYISNGFPDGGAEKQKNADIAAHGVTESASSNIEENGNGLSGQPKLTRDELLLALMALA
VRDFGPADTDSEPDVLTAKFDDFGSGDGKKSKRRKESGKARTFEGMGTMYRVEVGKRDGV
KPGSIVGAITGEGGLRSSQLGRIDIYPSFSIVEFEKELDAKTIQKIARAKVQGRALDISR
DNGPGAAKKAKNSNAKSVIIISTVISMSIVKPKLGSTVLIKSMVMKNVRGLNHSAAMSAV
SKNLSSAERNPEKL
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaacataatctccttcagcgagctcggactaccagaaaacctattacaagca
attactgatctcggatttaaaactcccactccgattcaggcaaaagcaattccggcattg
ctgaatcagcgtgatgtagttggagttgcacaaaccggaaccgggaaaactgcggcattc
ggattgccgatgctgacgcatgtagacccgaatgaaaaatgcgtgcaagctttaattctt
gcaccaacccgtgaacttgcgctgcaaggagctgacgcaatctcaacttttgcaagtaag
acggcggaattaaatgtagtcgcagtctatggcggttcagcttatggcccgcagctaaat
gcgctgaagaatggcgcacaagttgttgttggaactccagggcgaattatggatttgatg
gaccgcggtgcgcttaagctggataaagtgcgctatttcgtgcttgatgaagccgatgaa
atgctgcggatgggatttgctgaagacgtggagaaaatcgctggtgaattaccatcgatg
cggatatctgcattgttttcggcaactatgccaagctcgattcgtaaaattgcgactgaa
catttgcaagatccgctcgaaatcactgtgactcccgcagcatccacagtggatacaatt
gcgcagactttcgccgtggttcccaaccgccataaaattggtgcgctctcacgtgtgctt
gccactacggaagcggaagctgcactcgtattcgtacgcacgcgtgcgacggcagaagaa
ctttcgcttgaacttactgcgcgcggagtgcatgcagcagcactttcaggtgatgtggcg
caggttgaacgtgaaaagctggtaaatcggctccgttcaggtttccttgacgtccttgtc
gcaacagatgtcgctgcccgcggtcttgatgtggagcggattggactcgtggttaatttt
gatgtgccgcgagaagttgatacttacgttcaccgtatcggacgcaccgggagagccgga
cgtgaaggcactgcacttacattcgtcacaccaaaagaacgctcacgtttgcgtaaaatt
gaagctgttaccaaatcaagcatgattcaggttgatttgccaacaccggcagaagtttcg
gcctaccgcagtcaaaaactaattgaacaggcagaagcgcgttttgctgccggacgcctt
tgggtatatgcggatgtcctcgccaaatatgaggcagattctgatgaaactgctgattta
caaacctatatttcgaatggttttcccgatggcggtgccgaaaaacagaaaaatgccgat
attgctgcacatggggttactgaatcagcttcgagtaatattgaagaaaacggaaatggg
ctttctgggcagccgaagcttactcgtgatgagctgcttcttgcgttaatggcgttagct
gtgcgcgatttcgggcctgctgatactgacagcgaaccggatgtgctaaccgcaaaattt
gatgatttcggcagcggtgacggtaagaaaagtaaacgccgcaaagaatcaggtaaagcc
cggacgttcgaaggcatgggtacgatgtaccgtgtggaggttgggaaacgcgacggtgtg
aaaccaggttccatagttggtgcgattaccggtgaaggcggtttgcgtagttcacagctc
ggcagaattgatatttacccgtcgttttcgattgttgaatttgaaaaagagcttgatgcg
aaaacaatacaaaaaattgcccgcgcgaaagtccaagggcgtgcgcttgatatttcacgc
gataatggtccgggtgctgcaaaaaaggcgaaaaattcaaacgcgaaaagcgtcataata
atttcgacggtgatttcaatgagtatagtgaaacccaaactcggaagtaccgtgctgata
aaaagtatggtgatgaaaaacgtgcgcggcttgaatcactcagccgcgatgagcgccgta
tccaaaaatctgagcagcgcggaaagaaacccggaaaagttgtga
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