Aeromonas hydrophila ML09-119: AHML_11745
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Entry
AHML_11745 CDS
T02683
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ahy
Aeromonas hydrophila ML09-119
Pathway
ahy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AHML_11745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahy03019
]
AHML_11745
03009 Ribosome biogenesis [BR:
ahy03009
]
AHML_11745
Enzymes [BR:
ahy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AHML_11745
Messenger RNA biogenesis [BR:
ahy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AHML_11745
Ribosome biogenesis [BR:
ahy03009
]
Prokaryotic type
rRNA processing factors
AHML_11745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AGM44129
LinkDB
All DBs
Position
2604483..2607575
Genome browser
AA seq
1030 aa
AA seq
DB search
MRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLKEI
ARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNN
PRAGGISRRIEGDERTELKEALSGLTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDS
IHKASQSRSAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVRPDFLN
RVKLYKGEVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRATKGGD
IEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARI
QLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLALSILRLIEEEAMKD
NTEQVHGQVPVDVAAYLLNEKRASIASLEQRNDVRVYIIPNQHLETPHYEVTRIRQNEIP
EAASYELKTEIAKPVYQPKQAQVIEREQPLLQGFVQAPQPAPAAPAPVVAPAALAAPEAG
LFGKLFKAISGLFGSDTAPADVKAPADKPAAQREARKDEGHRHQRDETRSRGQRGRRDDN
RGNRSPADTAEKREAGANREGGESRNRRPRKEREPRQEREARGEVREQRMEREPREAREP
RQEREPRAPRPAREPRAPREPRAEVVVEAVETVDTIMVNDEPRLEKEQKVAERRERRQLR
KQIRVDAPASDVAALPADAPVVAEEASDAVEQHDEQAEGQRRSRRTPRNQRIEGQRRKRI
NEDARSQREDEEQSAEGTAPTLTAAAQADAAQVKVEEPAVPVITIPSAEAVAAALQASAA
LTEHVVPEAVVAEAHEQAEVVAAEPVVTEAVVAEEAQVAVVNEPVVAEVAAPVIAEAVAV
EAPAIETAVVEAAPAAPAVEEAAPAVVVAEVAPLVVEQPAPVAEPVIADEAPVAAAVVAP
VTKQVKRGGGLLAGARKASAPMATPAAAPALPVREPVDHAPLVRSEVASSGRHGGSTAAV
NVATSPAGRP
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcgtagcgctggttgacggacaacagctctacgatctggatattgaaagtccggga
cacgagcagaaaaaagcgaacatttacaagggcaaaatcacccgcgtagaacccagtctt
gaagctgcttttgtcgactatggcgccgagcgccacggtttcctgccgttaaaggaaatc
gcccgcaattacttcccctccggttactcctatcagggtcgtcccaacatcaaagaagtg
gtccgcgaaggccaggaagtgatcgtccagatcgacaaggaagagcgtggcaccaagggt
gcagccctcaccacctttatcagtctggccggcagctacctggtactgatgccgaacaat
cctcgcgccggtggtatctcccgccgtatcgaaggtgatgaacggactgaactgaaagaa
gccctgagcggcctgaccgtgccggacggcatgggcctcatcgtgcgtactgccggtgtg
ggcaaatccccggaagagctggaatgggatctgaacgttctgctcaaccactgggattcc
atccacaaggcgtcacagagccgctccgcgccggtgctgatccatcaggaaagcaacgtc
atcgtgcgtgccatccgtgactatctgcgtcgcgatgtcggcgagatcctgatcgacaac
ccggtcatcttcgagcgtgccaaggcgcatatcgagctggttcgtcccgatttcctcaat
cgagtgaagctgtacaagggtgaagttgccctgttcaaccacttccagatcgagagccag
atcgagtctgccttccagcgtgaagtgcgtctgccttccggcggcagcatcgtcatcgat
ccgaccgaagcgttgacctccatcgatatcaactcctcccgcgccaccaagggcggcgat
atcgaagagacggcgctgcaaaccaacctggaagcggccgacgaaattgcccgtcaattg
cgcctgcgcgacctgggtggcctgatcgtcatcgacttcatcgacatgaccccggttcgt
catcagcgcgaagtggaaaaccgtctgcgtgaagcggtgcatcaggatcgtgcccgcatc
cagctgggccggatctcccgtttcggtctgctggagatgtctcgccaacgtctgcgtccc
tccctcaacgagtccagcagccatatctgccctcgttgccagggccagggagtgatccgt
gacaacgaatcactggccttgtccatcctgcgtctcatcgaagaagaggccatgaaggac
aacaccgagcaggttcacggccaagtgccggtcgatgttgccgcctatctgctcaacgag
aagcgtgcctccatcgccagcctggaacagcgcaatgatgtgcgtgtctacatcattccg
aaccagcatctggaaaccccgcactacgaagtgacccgcatccgccagaacgagatcccg
gaagcggccagctacgagctgaaaaccgagattgccaagccggtctaccagccgaagcag
gctcaggtgatcgagcgcgaacaaccgctgctgcaaggttttgtccaggcgccccagccg
gctcccgccgcgccggccccggtcgtggctcccgctgcactggccgcgcccgaagccggt
ctgtttggcaagctgttcaaggccatctccggcttgttcggttccgacaccgcccctgcc
gacgtgaaggctcctgccgacaaaccggcagcccagcgcgaagcacgcaaggatgagggt
catcgtcatcaacgcgatgaaacccgcagccgtggtcagcgtggtcgtcgtgatgacaac
cgtggtaaccgcagccctgccgatactgcagagaagcgggaagcgggtgccaaccgtgaa
ggcggtgaaagccgcaaccgtcgtccccgcaaagagcgcgagccacgccaggagcgtgaa
gcccgtggcgaagtgcgtgaacagcgcatggaacgtgaacctcgcgaggctcgtgagccg
cgtcaggaacgcgaaccccgcgcaccgcgcccggctcgtgaaccccgtgctccgcgtgaa
cctcgcgccgaagtggtcgttgaagcggtagaaaccgtcgataccatcatggtcaacgac
gagccgcgtctggaaaaagagcagaaagtggctgagcgccgcgaacgccgtcaactgcgc
aagcagatccgggtcgatgccccggccagcgacgttgccgccctgcctgccgatgctccg
gttgttgccgaagaagcctccgacgcagtagagcagcacgatgagcaggccgaaggccag
cgtcgttcccgccgtacgccgcgcaatcagcgtatcgaaggccagcgtcgcaagcgcatc
aatgaagatgcccgcagccagcgtgaagatgaagagcagtctgccgaaggcactgcccct
accctgactgcagctgcccaggcagatgccgctcaggtgaaagtggaagagccggcagtc
cctgtcatcaccatccccagtgctgaagcggttgccgccgccctgcaggcctctgctgcg
ctgaccgagcatgtcgtgcctgaagccgttgtggccgaggctcacgagcaggctgaagtc
gtggccgcagagccagtggtaaccgaagcggtagttgctgaagaagcccaggtagcggtt
gtcaacgagccagtggttgcagaagttgctgctccggtcattgcggaagccgttgcggtc
gaggctccggccatcgaaactgccgtggttgaagcggcacctgctgctccagcagttgaa
gaagcggctccggcagtggttgtagccgaggttgcccctctggtggttgaacagccagct
ccggtcgctgagcctgtcatcgctgacgaggctccggtagctgctgccgtagtagcccct
gtgaccaagcaagtcaaacgtggtggtggcctgctggccggtgcccgtaaggcctctgcg
ccgatggcaacaccggcagctgcccctgccctgccggtacgtgagccggttgatcatgcg
ccgctggtgcgtagcgaagtggcaagctccggtcgccatggcggcagtaccgcagcggtc
aacgttgcaaccagcccggccggtcgtccttga
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