Pseudalgibacter alginicilyticus: APS56_08145
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Entry
APS56_08145 CDS
T04100
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
ahz
Pseudalgibacter alginicilyticus
Pathway
ahz02020
Two-component system
ahz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ahz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
APS56_08145
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
APS56_08145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahz03021
]
APS56_08145
Transcription machinery [BR:
ahz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
APS56_08145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
AbiTii
LacI
DUF7674
MarR
Motif
Other DBs
NCBI-ProteinID:
ALJ05097
UniProt:
A0A0P0CL12
LinkDB
All DBs
Position
complement(1957132..1958592)
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AA seq
486 aa
AA seq
DB search
MLKQQLQFKLSQKLSPQQIQLMKLIQLPTQAFEQRLKQELEENPALESGKEALENDYDAD
LDNSNDDFNDSETIGNDDINVDEYLSDDEIPDYRTQVNNYSSDDEEKTMPYAAGTSFTQY
LINQLNTYRLDDEAREIAEFLVGSVDESGYIRRSLSDIMDDLAFTQNVYTTEEKIQSVLH
LVHQLDPAGVGARNLQECLSIQLHRKEKNADIALAANIIDSAFDQFTKKHYKKLMQKFDI
SELQLKDAISEIEHLNPKPGGSYSGNNRIVEHVVPDFAIKIVDGELELTLNGRNAPELHV
SREYNNMLKGYKDSKEKSNSQKDAVIFIKQKLDAAKWFIEAIKQRQQTLFVTMSAIMHYQ
KDYFLTGDERKLKPMILKDIADEINMDVSTVSRVANSKYVDTPYGTKLIKEFFSESMKND
QGEDVSTREIKKILEIVIEEENKRKPLTDETLALILKDKGYPIARRTVAKYREQLDIPVA
RLRKKI
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgctcaagcaacaattacaatttaagctatcacaaaagttatcgccgcagcagattcaa
ttaatgaaattgatacagttgcctacgcaggcttttgagcaacgtttaaaacaagaactt
gaagaaaaccctgcacttgaaagtggtaaagaagctcttgaaaatgattatgatgctgat
ttagataattctaatgacgattttaatgatagtgaaactataggaaatgatgatattaat
gttgatgagtatttaagtgatgatgaaataccggattatcgtacacaagtaaataattat
agtagtgatgatgaagaaaaaaccatgccttatgctgctggaacttcatttacacaatac
ttaattaatcaattaaatacataccggttggatgatgaagctcgtgaaattgcagaattt
ttggttggtagcgttgatgaaagtggttatatccgtagatctttatcagatatcatggat
gatttagcattcactcaaaatgtttatacaactgaagaaaaaattcaatccgtgttgcat
cttgttcaccaattagaccctgcaggtgtaggagcacgtaatttgcaggaatgtttaagt
atccaattgcatagaaaagaaaaaaatgctgatatagctttagctgctaatattatagac
tctgcatttgatcagtttacaaaaaagcattataaaaaattaatgcagaagtttgatatc
tcagaacttcagctaaaggatgctatttcagaaattgaacatttaaatccaaaaccagga
gggtcttattcaggaaataatagaatcgttgagcacgtggttccagattttgctattaaa
atagttgatggagaattagagttaactctcaacggtagaaatgcaccagaattacatgtt
tcaagagaatataataacatgttaaaaggctataaagattctaaggaaaaatctaattct
caaaaagatgctgttatatttattaaacaaaaattggatgcagcaaaatggtttattgaa
gctattaaacaacgtcaacaaactttatttgtcactatgagtgctattatgcactatcaa
aaagattactttttaactggtgatgagcgtaagcttaaacccatgatattaaaagatata
gccgatgaaataaatatggatgtatctactgtatcaagagtagccaatagtaaatatgtg
gataccccttatgggaccaaattaattaaagaatttttctctgaatccatgaaaaatgac
caaggcgaagatgtttcaactagggaaataaaaaaaatattagaaattgttattgaggaa
gaaaataaaagaaagccacttacagatgagactttagcactaattttaaaagacaaaggg
tatccaatagcaagacgtaccgttgcaaagtatagagaacaattggacattccagtagcg
cgattaagaaaaaagatatga
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