Pseudalgibacter alginicilyticus: APS56_13195
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Entry
APS56_13195 CDS
T04100
Name
(GenBank) RNA polymerase subunit sigma
KO
K03086
RNA polymerase primary sigma factor
Organism
ahz
Pseudalgibacter alginicilyticus
Pathway
ahz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ahz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
APS56_13195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahz03021
]
APS56_13195
Transcription machinery [BR:
ahz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
APS56_13195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r1_2
Crp
PgaD
IF2_N
Motif
Other DBs
NCBI-ProteinID:
ALJ06028
UniProt:
A0A0P0DDB7
LinkDB
All DBs
Position
complement(3183351..3184214)
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AA seq
287 aa
AA seq
DB search
MRQLKITKQVTNRESKSLDKYLQDISKIPLITAEEEVELAQRIHKGDQKALDTLTTSNLR
FVVSVSKQYQNQGLTLPDLINEGNAGLVKAAKRFDETRGFKFISYAVWWIRQAILQALAE
QSRIVRLPLNKIGSINKINKAYSFLEQTHERAPSAQEIANNLDLTVSNVKQSLKISGRHI
SMDAPFKEGETSNLYDVINSDESPRPDSDLIKNSLNMEVNRALNTLSEKEAEVIRHYYGI
SKKQPMSLEEIGDAFGLTRERVRQIKEKAIRRLRHTSKSKVLKTYLG
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgaggcaattaaaaatcacaaaacaagttaccaaccgagaatccaaatccttagataaa
taccttcaagacattagtaaaatcccattaattaccgccgaagaagaggtagaactggca
caacgcatacacaaaggcgatcaaaaagcattggataccctcacaacttctaatttacgt
tttgtagtttctgtttcaaaacaatatcaaaatcaaggattaacattacctgacttaatc
aatgaaggcaatgctggcttggttaaagcagcaaaacgctttgatgaaactagaggtttt
aaatttatttcttatgctgtttggtggattagacaagcaattcttcaagctttagcagaa
caatctcgaatagttagattacctttgaacaaaattggctctattaataaaataaataag
gcttattcctttttagagcaaacacatgaaagagcacctagtgcccaagaaattgccaat
aatttagatcttacagttagcaacgttaagcaatctttaaaaatttcgggtaggcatata
tctatggatgcaccttttaaagaaggtgaaacatctaatttatatgatgttattaattct
gacgaatctcctagaccagattcagatttgataaaaaactcattaaacatggaagtaaac
cgtgccttaaatacgctttctgaaaaggaagcagaagttattcgtcattattatggcatc
agtaaaaaacaacctatgagccttgaagaaataggagatgcttttggtttaacacgtgaa
cgtgtaagacaaattaaagaaaaagccatcagacgattaagacacacctcaaaaagtaaa
gtactaaaaacgtatttaggataa
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