Pseudalgibacter alginicilyticus: APS56_14250
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Entry
APS56_14250 CDS
T04100
Symbol
gyrB
Name
(GenBank) DNA topoisomerase IV subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ahz
Pseudalgibacter alginicilyticus
Brite
KEGG Orthology (KO) [BR:
ahz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahz03032
]
APS56_14250 (gyrB)
03400 DNA repair and recombination proteins [BR:
ahz03400
]
APS56_14250 (gyrB)
Enzymes [BR:
ahz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
APS56_14250 (gyrB)
DNA replication proteins [BR:
ahz03032
]
Prokaryotic type
DNA Topoisomerases
APS56_14250 (gyrB)
DNA repair and recombination proteins [BR:
ahz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
APS56_14250 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
Toprim_4
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ALJ06224
UniProt:
A0A0P0CJ21
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All DBs
Position
3426079..3428028
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AA seq
649 aa
AA seq
DB search
MSEPKEEFNKHNYSADSIQALEGMEHVRMRPSMYIGDVGTRGLHHLVYEVVDNSIDEALA
GHCNNITVIINEDNSITTEDDGRGIPVDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSG
GLHGVGVSCVNALSDHLKATVYRNGEIWEQEYERGKALYPVKKVGETEKRGTIVTFKPDA
TIFTQTLEYSYDTLASRLRELAYLNKGITVHLVDRRTKKENGEFEGETFHSEEGLSEFIQ
YLDATREPLMKDVISFEGEKNGVPVEVAMIYNTSYAENLHSYVNNINTHEGGTHLSGFRR
GLTHTLKKYADESGLLKNLKFDIAGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVSA
SVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAAQKARDMVQRKTVMSIGGLPGKL
SDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMTHKVFENEEI
KNIFTALGVTIGTEDDSKALNLSKLRYHKVVIMCDADIDGSHIATLILTFFFRYMKELIE
NGHIYIATPPLYLIKRGAKKQYAWSDKERDQIISEFGDGSKIQRYKGLGEMNAEQLWDTT
MNPEFRTMRLVQIDNGTEADRIFSMLMGDEVPPRRDFIEKNAIYANIDA
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacctaaagaagaatttaataagcataattattcggcagatagtatccaagct
ttagaagggatggagcacgtgcgtatgcgcccatccatgtatattggagatgtaggaact
cgtgggttacaccacttggtttatgaggtagttgacaactctattgatgaggctcttgca
ggacattgtaataatataacggtaatcattaatgaagataactcaataactacagaagat
gatggtcgaggtattcctgtagatttacacaaaaaagaaggtgtttcagcgcttgaggtg
gtaatgacaaagattggagcaggaggtaagtttgataaagactcttacaaggtttctggt
ggattacacggtgtgggtgtaagttgtgtgaatgcattgtctgatcatttaaaagcaacc
gtttacagaaatggagaaatttgggagcaagaatatgagcgcggtaaagctttgtatcct
gttaaaaaagtaggggaaactgaaaaaagaggtacaattgtaactttcaagccagatgcc
actatttttactcaaactttagagtatagttatgatacccttgcaagtagattgcgtgaa
ttggcttatttgaataaaggtattacggttcatttggttgatagaagaactaaaaaagag
aatggtgaatttgaaggtgaaacatttcattcagaagaaggtttgtctgaatttattcaa
tatttagatgccactcgtgagcctttaatgaaagatgtgatttcctttgaaggtgaaaaa
aatggggtacctgttgaggttgctatgatttataacacctcgtatgctgaaaacttacat
tcgtatgttaacaatattaatactcatgaaggaggaacgcatttgtcaggatttagacgt
ggattaacacatacccttaaaaagtatgctgatgaatcaggtttgctgaaaaatttaaaa
tttgacatcgctggggatgatttccgtgaaggtttaacggctattatttcggtaaaagtt
caagagcctcaatttgaaggacaaaccaaaacaaagttaggaaatagagaagtttcagca
tcagtaagtcaagcggtttctgaaatgttgactgactatttggaagaacacccagacgat
gctaaaaccattgttcagaaagtgattttagctgcacaagctcgtcatgctgctcaaaaa
gcgcgcgatatggttcagcgtaaaacagtcatgagtattggagggttgccagggaaatta
tctgattgttctgaacaagaccctgcaaaatgtgaagtatttcttgttgagggagattcg
gcaggtggaaccgcaaaacaaggtcgagatagagcctttcaagccattcttccgctacgt
ggtaaaatcttaaatgttgaaaaagccatgactcataaggtttttgaaaacgaagagatt
aaaaatatttttacggctttaggggtaaccattggtaccgaagatgatagtaaggctttg
aatttatcaaaactacgttaccataaagtagtaattatgtgtgatgctgatattgacggt
agtcacattgcgactttaattttaacgttcttctttagatatatgaaagaactcattgaa
aatggacatatttatattgcaactccacctttgtatttaataaagagaggtgctaaaaaa
caatatgcttggtctgacaaggagcgtgaccaaattatttcggagtttggtgatggctcg
aaaattcaacgatataaaggtcttggtgagatgaatgcggaacaactttgggataccacg
atgaatcctgaattcagaaccatgcgtttggtacaaatagataatggtacggaagcagac
agaatattctcaatgttaatgggagatgaggtgccgccacgtagagattttatcgagaaa
aatgctatttatgcaaatattgacgcctaa
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