Anaerobacillus isosaccharinicus: AWH56_007585
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Entry
AWH56_007585 CDS
T06884
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aia
Anaerobacillus isosaccharinicus
Pathway
aia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AWH56_007585 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aia03400
]
AWH56_007585 (mfd)
Enzymes [BR:
aia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWH56_007585 (mfd)
DNA repair and recombination proteins [BR:
aia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AWH56_007585 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
IstB_IS21
UB2H
CUB_M02D8_5_5th
Motif
Other DBs
NCBI-ProteinID:
QOY37466
UniProt:
A0A7S7LAR5
LinkDB
All DBs
Position
96705..100229
Genome browser
AA seq
1174 aa
AA seq
DB search
MLGLKRFFLEDDDVRAVLDGIEAELSEQMVSGLTGSARTLLLASVYEQTKRSQIVVTNNL
FQAQKLYDDLVGLIGEELVYLYPVNELISSEIAVASPEMRGQRIEALNFLSQEKAGVVIT
PIAGLRRLLPPKEIWQQCQLKFKVGEEINVEEKLKKLVQAGFQRTEMVSTPGQFSLRGGI
IDIYPLTEEMPLRIELFDTEVDSIRFFDVDTQRSQKQLKEIKIGPAQEVILYDEHYERGA
HQLKDGLSTSLAKLKDSKAKESMLEKITYEIEMLRRKQSFEGMYKYMSLYYGKVTTLLDY
LPTSGVIFIDEISRVQEMGVSLDKEEAEWQTSLLAEGAIIADLKMSKHLDEIISETKKPI
VYFSLFLRHVPHTSPKNIINFNCKSMQSFHGQLNLLKNEVDRWAKSNYKIVITASEKDRA
KRIEGILEDYKIEAMVVDHSLELVNGCQIVVGQLTGGFELPLQKLIVITEEEIFTKKTKR
PKRKQKLSNAERIKNYSELKIGDLVVHINHGIGKYLGIQTLEINGIHKDYMHITYAGNDK
LYVPVEQIDQVQKYVGQEDKDPKIYALGGSDWKKVKKKVQSSVEDIADDLIKLYAEREAS
IGYAFSKDGIEQRELESSFPYEETEDQIRCIEEIKADMERQRPMDRLLCGDVGYGKTEVA
IRAAFKAIMDGKQVAFLVPTTILAQQHYETIRERFSEHPINIGLLSRFRTRKEQNETIKG
LKSGGIDIVIGTHRLLSKDAIYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNEALVREAIERELSRGGQVYFLYNR
VEEIAQMADKISMLVPDARVSFAHGKMNETELESVIIDFLEANSDVLVTTTIIETGVDIP
NVNTLIVYNADKMGLSQLYQLRGRVGRSNRVAYSYFTYQKDKVLTEVAEKRLQAIKEFTE
LGSGFKIAMRDLSIRGAGNLLGAQQHGFIASVGFDLYSQMLKEAIEARKGNPEDKVVHQE
VEIDLSVDAYIPETYINDSKQKIDMYKRFKAIESKEDIEDLQGEMIDRFGDYPEEVSYLF
AISAIKLLARQERVEAITEDNQQCSILLAEDESQRIDGMKLFELISKMGRELSVGTAGQK
IKINIKTKNFQPSKYLEVIEEILAKLWTVKKEDE
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgttaggtttgaagcgtttttttttagaagacgatgatgttagggcggtcttagacgga
atcgaagctgagttaagtgagcagatggtttctggcttaacaggttcagcaagaacatta
ttactagcttctgtatatgaacaaacaaaaaggtctcagattgtggtgacgaataatcta
tttcaagcccaaaagctatatgatgatctcgtaggtttaatcggtgaagagttagtttat
ttatatccagtaaatgagttgatctcttcagaaatagcagtagcaagtcctgaaatgaga
ggacaacgtattgaggctttaaattttttaagtcaggagaaagcaggggttgttattacg
ccgattgctggcttaagaagattactaccaccaaaagaaatttggcaacaatgtcaatta
aagtttaaagtaggggaagaaataaatgtagaagaaaaacttaagaagcttgttcaagcg
ggatttcaaagaacggaaatggtttctaccccagggcaatttagtttacgggggggaatc
atcgatatatacccactaactgaagaaatgccattacgaattgagttatttgatacagag
gttgattcaattcggttttttgacgtggatacacaaagatctcaaaaacaattaaaagaa
attaagattggtccagctcaagaagtgattttatatgatgagcattatgaacgaggagca
caccaattaaaagatggattatctactagtttagcaaagctaaaagattcaaaagcaaaa
gaatcaatgcttgaaaagataacctacgaaatagagatgcttagaagaaagcaatctttt
gaaggtatgtataaatacatgtctttgtattacggtaaagtaacaacattactggattat
ttacctactagtggtgttatttttattgatgaaattagccgggtacaggaaatgggagta
agtcttgataaagaagaggctgaatggcaaacctcactacttgcagaaggagcaattatt
gctgacttaaaaatgtcgaaacatttagacgagattatttcagaaacgaaaaagccaatc
gtctacttctcattatttttaagacatgttccacatacgagtccgaaaaatattattaat
ttcaattgtaaatcgatgcaaagctttcacgggcagttaaatttgttaaaaaatgaagta
gaccggtgggcaaagtcgaactataaaattgtcattacagcgtctgaaaaagatcgggcg
aaacgaatcgaaggtatattggaagattataagattgaagcaatggttgttgatcattct
ttagaacttgttaacggttgtcaaattgtagttggacaattaacaggtggttttgaattg
cctttacaaaagctcatcgttattacagaagaagagattttcacaaagaagacaaagcga
ccaaaacgtaaacaaaagctctctaatgccgaaagaattaaaaattattcagagttgaaa
attggcgatctagttgttcatattaatcatgggataggaaaatatttagggattcagacg
ttagagattaatggaattcataaagattatatgcatattacgtacgcaggaaacgataaa
ctttatgttccagttgaacaaattgaccaagtacaaaagtatgttggccaagaagataaa
gacccaaagatttatgcattgggtggtagtgattggaaaaaggtcaaaaagaaagttcag
tcatctgttgaagatattgccgatgacttaattaagctttatgccgaaagagaagctagc
attggttatgcattttcaaaggatggtattgagcaaagagaacttgaatcttcctttcct
tatgaagaaacagaagaccaaattcgctgtattgaagaaattaaagcggatatggaaaga
caacgtccaatggatcgcttgctttgtggtgatgttggttatggtaaaacagaagttgcc
attcgggctgcgtttaaagccattatggatggaaaacaagtagcctttttggttccgacg
acaattttagctcaacagcattacgagacgattcgtgagcggttttcagagcatccgatt
aacatcggacttttaagtcgatttagaactcgtaaggaacaaaatgagacgatcaaagga
ctcaaatccggtggcattgatatagtcattggtacacatcgtcttttatcaaaggatgcc
atttataaagacttaggtttattaattattgatgaggaacaacgttttggggtgacccat
aaagaaaaaataaagcaattgaaagctaatgtcgatgttttaacattaacagcaactcca
attccaagaacattacatatgtccatgttaggagttcgtgatctttctgttattgaaacc
ccacctgaaaataggtttcctgtacaaacatatgtggtggagtacaacgaagcccttgtt
cgtgaagctattgagagagagcttagcagaggaggacaggtatatttcctctataataga
gttgaagaaattgctcaaatggccgataaaatttcaatgctcgttccagatgctcgtgta
tcctttgcccacgggaaaatgaatgaaacagaactggaatcggttattattgacttctta
gaagcaaatagtgatgtattggtaacaacaacgattattgaaactggggtagatatacca
aatgtaaatacattaattgtatataatgcagataaaatgggcttgtcccaactctatcaa
ttaagaggacgtgttggacgctcaaatcgtgtagcttattcttattttacttatcaaaaa
gataaagtgttaacagaagtagcagaaaaacgtctacaagcgattaaagagtttacagag
cttggctcaggctttaaaattgcaatgcgcgacttatcgatccggggtgcaggaaacttg
ttaggagctcaacagcatggctttattgcttctgttggttttgatctctactctcaaatg
ctaaaagaagcgattgaagcacgtaaaggcaatccagaggataaggtagttcaccaagaa
gtcgaaatcgacttaagtgtagatgcatacattccagaaacgtatatcaatgactctaag
caaaagatcgacatgtataagcgctttaaggcaattgaatcaaaagaggatattgaagat
cttcaaggggaaatgattgatcgtttcggtgattacccagaggaagtttcttatttattt
gctatctcagctataaagttgttagcaaggcaagaacgtgtagaagcgataacggaagat
aatcaacaatgttcaattctattagcggaagacgagagtcaacgtattgacgggatgaaa
ctctttgaattaattagcaagatgggaagagaactttctgtaggaacagcaggacaaaag
ataaaaataaatattaaaactaagaattttcaacctagcaagtatttagaggtaatagag
gaaattttagctaaattatggaccgttaaaaaggaagacgaataa
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integrated database retrieval system
