Anomalospiza imberbis (cuckoo-finch): 137466761
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Entry
137466761 CDS
T11605
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aib Anomalospiza imberbis (cuckoo-finch)
Pathway
aib03013
Nucleocytoplasmic transport
aib03015
mRNA surveillance pathway
aib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137466761
09122 Translation
03013 Nucleocytoplasmic transport
137466761
03015 mRNA surveillance pathway
137466761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aib03019
]
137466761
03041 Spliceosome [BR:
aib03041
]
137466761
Enzymes [BR:
aib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137466761
Messenger RNA biogenesis [BR:
aib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
137466761
Spliceosome [BR:
aib03041
]
Complex C
Other components
EJC/TREX
137466761
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137466761
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
137466761
NCBI-ProteinID:
XP_068034544
LinkDB
All DBs
Position
Unknown
AA seq
420 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENAAGPDGAEAAPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEIVVXGTPGRILALARNKSLNLK
HIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPME
IFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLV
EQNFPAIAIHRGMPQEERWDRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDS
DTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgtggacaacgagctgctggactacgaggacgacgaggtggagaac
gcggccgggccggacggcgccgaggcggcccccaagaaggacgtcaagggctcctacgtg
tccatccacagctccggcttccgcgacttcctgctcaagcccgagctgctgcgcgccatc
gtcgactgcggcttcgagcacccctccgaagtccagcacgagtgcatcccccaggccatc
ctgggcatggacgtgctgtgccaggccaagtccggcatgggcaagacggccgtgttcgtg
ctggccacgctgcagcagctggagcccgtcacggggcaggtgtcggtgctggtgatgtgt
cacacgcgggagctcgccttccagatcagcaaggagtacgagcgcttctccaagtacatg
cccagcgtcaaggtggcggtgtttttcggggggctgtccatcaagaaggacgagatcgtg
gtggggaccccgggccggatcctggcgctggcccgcaacaagagcctcaacctcaaacac
atcaagcacttcatcctggacgagtgcgacaagatgctcgagcagctcgacatgcgccgg
gacgtccaggagattttccgcatgaccccgcacgaaaagcaggtcatgatgttcagcgcc
accctgagcaaggaaatccgccccgtgtgccgcaaattcatgcaagaccccatggagatc
ttcgtggacgacgagacgaagctgacgctgcacgggctgcagcagtactacgtcaagctc
aaggacaacgagaagaaccggaaactcttcgacctccttgacgtgctcgagttcaaccag
gtggtgatcttcgtcaagtccgtgcagcgctgcatcgccctggcgcagctgctggtggag
cagaacttcccggccatcgccatccaccggggcatgccgcaggaggagaggtgggaccgg
taccagcagttcaaggacttccagcgccgcatcctggtggccaccaacctctttggccgc
gggatggacatcgagagggtcaacatcgccttcaactacgacatgcccgaggactcggac
acctacctgcaccgggtggcccgggccggccgcttcggcaccaaaggcttggccatcacc
ttcgtgtcggacgagaacgacgccaaaatcctcaacgacgtgcaggaccgcttcgaggtg
aacatcagcgagctgcccgacgagatcgacatctcctcctacatcgaacagacccgataa
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