Anomalospiza imberbis (cuckoo-finch): 137468465
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Entry
137468465 CDS
T11605
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
aib Anomalospiza imberbis (cuckoo-finch)
Pathway
aib03013
Nucleocytoplasmic transport
aib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aib00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137468465 (UPF3A)
03015 mRNA surveillance pathway
137468465 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aib03019
]
137468465 (UPF3A)
Messenger RNA biogenesis [BR:
aib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137468465 (UPF3A)
mRNA cycle factors
P-body specific factors
137468465 (UPF3A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
137468465
NCBI-ProteinID:
XP_068036341
LinkDB
All DBs
Position
2:26917253..26943831
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AA seq
458 aa
AA seq
DB search
MRSEREAGPGPGPGPGRGGGRDSRPMDAPLPQESPRRDTDAPPNPPPPSPLPPPLHPAPG
KQREEKKTALSKVVIRRLPPCLTKEQLEEQLHPLPAHDYFEFCTADPSLYPHLYSRAYIN
FRNPEDILLFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEY
RKFLENYCADEDKICANPEILLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKRE
ERRRRELEKKRLREEEKRKRREEERRKRKEVEKQKKISEKEIRIKLLKKPEKGDELASEK
HKEKGEEADIEENKWDKSPGSGSIKSKSLESSLKELKEKSQNDSDKEQRDLERRFREKEP
ERQRIVQPCSCTSQELASEHIWDLQVKPMTAVGNLLKMLLIKSMRQIIQLELVLKRLKKQ
NKTVWGKSLVKRNEFKIQHHHKNPLGCFRIPQAIASTK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggagcgggaggcagggccggggccggggccggggccgggccggggcggcggc
cgcgactcgcggcccatggacgccccgctgccgcaggagtcgccgcgccgcgacaccgac
gctccgccgaacccgccgccgccgtccccgctgccgccgccgcttcacccggcgccgggg
aaacagcgggaggagaagaaaacggcgctgagcaaagtggttattcgaaggcttcctcct
tgtctaaccaaggagcaactggaggagcagctgcatcctctacctgcccatgattatttt
gagttttgcactgctgatcccagcctttatcctcatctctactcaagagcatacattaac
tttagaaatcctgaggacatccttctttttagagatcgctttgatggctatgtcttcatt
gataataaaggtttggaatatcctgcagtggttgagtttgctccattccagaagatttca
aaaaagaagctgaagaagaaagatgccaaagctgggagcattgaagatgatccagaatat
aggaaatttttagagaattattgtgctgatgaagacaagatctgtgccaatcctgagatt
cttttgggagagattgaggccaaaacaagggaactcattgctagaagaacaacacccctt
ttggaatatattaaaaatagaaaattagaaaagcagagaatacgagaagagaaaagagaa
gaacgaaggcggagagaattggagaagaaacgtttgcgggaggaagagaaaaggaagcgc
agagaagaggaaagacgtaaaagaaaagaagtggagaagcaaaagaagatttctgaaaaa
gaaataaggatcaagcttctcaagaagcctgaaaaaggagatgaactggccagtgaaaag
cacaaagaaaaaggtgaagaagctgacattgaggaaaacaaatgggataaatcacctgga
tctggaagtataaaatccaaatctttggagagttcactaaaagaacttaaagaaaagtca
caaaatgatagtgacaaagagcaaagagatttggagagaagatttcgagaaaaagaacct
gaaagacaaaggatcgtccagccatgcagttgtaccagccaggagctcgcatccgaacac
atatgggacctacaagtaaaacctatgactgcagtgggaaatcttttgaagatgctcttg
ataaaaagtatgaggcagataattcagctggagctagttctgaaaagactgaagaagcag
aataaaacagtctgggggaaaagtcttgtaaaaaggaatgaatttaagattcagcatcat
cacaaaaatccattgggctgtttcagaattccacaggcaattgcatcaacaaaataa
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