Anomalospiza imberbis (cuckoo-finch): 137473645
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Entry
137473645 CDS
T11605
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
aib Anomalospiza imberbis (cuckoo-finch)
Pathway
aib03013
Nucleocytoplasmic transport
aib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aib00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137473645 (UPF2)
03015 mRNA surveillance pathway
137473645 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aib03019
]
137473645 (UPF2)
Messenger RNA biogenesis [BR:
aib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137473645 (UPF2)
mRNA cycle factors
P-body specific factors
137473645 (UPF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
137473645
NCBI-ProteinID:
XP_068045592
LinkDB
All DBs
Position
5:complement(6046164..6100149)
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AA seq
1271 aa
AA seq
DB search
MPAERKKPANMEEKESQLNNKEKEFSERRPVSTREKPKEDVKVGMKRDTLKVPEDKKKKM
EEDKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEEKKKQEEEAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDSRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKYSQNKDLSKDESRDSKDAKDNKEAAGNEDLELELENLDINDDALELDCGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFKFHVKKKDQINIE
TKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLKEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAVRQVQDLEREFLIKLGIVNDKDSKD
SITEGENLEEDEEEEEGGAEIEEQSGNESEVNDPEEEEVSDNEEEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagccagcaaatatggaagaaaaagaatctcagttaaataat
aaagaaaaagaatttagtgaaaggcgaccagtgagcaccagggagaagccaaaagaagat
gtgaaggttggcatgaagagagatactttaaaggttcctgaagataaaaagaaaaaaatg
gaagaggataaaagaaagaaggaagacaaggagcggaagaaaaaagaagaggataaagta
aaggcagaagaggagcaaaagaagaaagaagaagaagaaaaaaagaaacttgaagaagag
gagaaaaagaaacaagaggaggaagaaaaaaagaaacaagaagaagaagctgctcaactg
aaggagaaggaggaagcacatcagctccatcaggaggcttgggagcgccatcaggcaaga
aaagagctccgcagcaaaaaccagaacgcaccggacagtcgtccggaggaaaacttcttc
agcagactggattccagcctgaagaagaacacggcttttgttaagaagctaaaaaccatt
acagagcaacaaagggactccttgtcccatgactttaatagcctgaatttaagcaaatac
attgcagaagcagtagcttctattgtggaggccaaactgaaaatatcagacgtgaactgc
gctgtgcacttgtgttccctctttcaccagcgatatgctgattttgctccttcgttactt
caggcctggaaaaaacattttgaagcaaggaaagaagagaagactcccaacattaccaag
ttaagaactgatttgcgtttcattgcagaattgacaatagttgggattttcactgacaag
gaaggtttgtctttaatctatgagcagcttaaaaatattattaacgctgatcgagaatcc
cacactcatgtttctgtggttatcagcttttgtcggcactgtggagatgacattgctggt
ttggtaccaaggaaggtaaaaactgttgcagagaagtttaacttgagctttcctcctagt
gagataattagcccagagaaacagcagcccttccagaatttgttgaaggaatactttaca
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
agacgcattctccactccaaaggagagctgagtgaagatcgacacaagcagtatgaggag
tttgcaatgtcgtatcagaagctgttggcaaattctcagtctctggctgatcttttggat
gagaacatgcctgacctcccccaagaaaaaccaacacctgaggaacatggacctggtatt
gatattttcacaccagggaagcctggagaatatgacctggaggggggtatctgggaagat
gaagatgctagaaacttctatgagaatctcattgacttgaaggcttttgtgccagcaatt
ttgtttaaagataatgaaaaatattcccagaacaaggatttgagcaaagatgaatcaaga
gattcaaaagatgccaaagataataaggaagcagctgggaatgaggatctggaattggag
ctggagaacctggatattaatgatgatgcactggagttggactgtggagatgaggcagaa
gatcttacaaagaaacttcttgatgagcaagaacaagaggatgaagaagccagtactgga
tctcatttaaaactcatagtagatgcctttcttcagcagcttccaaattgtgtcaacaga
gacctcatagacaaggcagcaatggatttttgcatgaatatgaatacgaaagccaacaga
agaaaactagtacgagcacttttcatagttcctagacaaagattggatttgctaccattt
tatgcaagactggttgccacattgcatccctgtatgtctgatgtagcagaggatctctgt
tccatgctgaaaggggatttcaagttccatgtaaaaaaaaaggaccagatcaacattgaa
acaaagaataaaactgtgagatttattggtgagcttaccaagtttaagatgttctccaaa
aacgatactctccactgtttaaagatgcttctgtcagacttctctcatcaccatattgaa
atggcgtgtaccttgctggaaacctgtggaagattcctcttcagatcaccagagtctcac
ctaagaaccagtgttcttttggaacaaatgatgaggaaaaaacaagcaatgcatcttgat
gcacgctatgttacaatggtagaaaatgcctattactactgtaatccccctccagcggaa
aaaactgtgaagaaaaaacgtcctcctttgaaggaatatatccgtaagcttctttacaag
gatctctccaaggtcaccacagagaaggtcctgagacagatgcgcaagctgccttggcag
gatgcagaagttaaggactatgttatatgctgtatgatcaacatctggaatgtgaaatat
aatagtattcactgtgtagccaacctcttagcagggttggtcctttaccaggaagatgtg
ggaattcatgttgtggatggagtactagaggatattcgactaggaatggaggttaatcaa
ccaaagttcaaccaacggcggatcagcagtgccaagtttttgggggagctttacaattat
cgaatggtggagtcagctgtaatatttagaactctgtattccttcacctcatttggtgtg
aaccctgatggcagtcctagtccactggaccctccagaacaccttttcagaatcagactt
gtctgtactatcctcgatacctgcgggcagtattttgacagaggatctagcaagcgaaaa
cttgattgcttccttgtatattttcagcgctatgtgtggtggaaaaaaagtctggatgtt
tggacaaaagaccacccttttcctatagacatagactatatgatcagtgatacactggaa
ctgctgagaccaaagataaagctctgcaattctctggaagaagctgtcagacaggtgcaa
gacttggaacgagaattcttaataaaattgggaattgtgaatgacaaagattccaaagat
tctattacagaaggagagaatttggaagaggatgaagaagaggaggaaggtggagcagag
atagaggaacaatctggaaatgaaagtgaagtaaatgatccagaagaagaggaggtctct
gacaatgaggaagaggagggtgaagaagaggaggaagagaacactgattatcttacagac
tccaataaggaaaatgaaaccgatgaggagaatacagaagtaatgattaaaggaggagga
ttgaagcatgtcccttgtgcagaggatgaggacttcattcaggccttggataaaatgatg
ctggaaaatcttcagcaacggagtggtgaatctgttaaagtgcatcagttggatgttgct
attcctctgcatctcaaaagtcagctgaagaagggccccccacttggaggtggggaagga
gagtcagagtctggggacacaatgccatttgtcatgttaacaagaaaaggcaacaaacag
cagtttaagatcctaaatgtaccgatgtcttcccaacttgctgcaaaccattggaaccag
cagcaagcagaacaggaggagaggatgaggatgaaaaagctcactttggatatcaatgaa
cggcaggaacaagaggactatcaggaaatgttgcagtctctggcacagcgtccagctcca
gcaaatactaatcgtgagcggcggcctcgttaccagcatccgaagggagcacctaatgca
gatctaatctttaaaaccggtgggaggagacgttga
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