Anomalospiza imberbis (cuckoo-finch): 137474481
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Entry
137474481 CDS
T11605
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aib Anomalospiza imberbis (cuckoo-finch)
Brite
KEGG Orthology (KO) [BR:
aib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aib03016
]
137474481 (RTCB)
Enzymes [BR:
aib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
137474481 (RTCB)
Transfer RNA biogenesis [BR:
aib03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
137474481 (RTCB)
Prokaryotic type
tRNA splicing ligases
137474481 (RTCB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
137474481
NCBI-ProteinID:
XP_068047182
LinkDB
All DBs
Position
5:complement(58514123..58523835)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMRVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgccgaacatgcgtgtggagggcgttttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaatgcctgccgcggcggaggtgcgggt
ggcttcttgcctgctatgaaacagattgggaatgtggctgcattgcctggcattgttcat
agatcaataggccttccagatgtccattctggctatggatttgctattggcaacatggct
gcctttgatatgagtgatcctgaagcagtggtttcaccaggtggtgttggctttgacatc
aactgtggtgtccgcttgctgcggacaaatttggatgaaagtgatgtgcagcctgtgaaa
gaacagctcgcccaggctatgtttgaccacattcctgttggtgtcggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcactggagatgggtgtggactggtctctc
cgagagggctatgcctgggcagaggacaaggagcactgtgaggagtatggaagaatgcta
caggccgaccccaacaaagtctcttcaagggcaaagaaaaggggcctgcctcagctgggg
accctgggagctggtaaccattacgccgagatccaggtggtggatgagatttacaacgaa
tatgctgccaagaaaatgggcattgaccacaaagggcaggtgtgcgtgatgatccacagt
ggaagcagaggcctgggccaccaggttgccacagatgcactggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaatgatcgccagctggcatgtgccaggattgcctct
gcagagggacaggattacctgaagggaatggcagctgctggcaactatgcctgggttaac
cgctcttccatgactttcctaacacgacaggcctttgccaaagtcttcaacacaacgcca
gatgaccttgacatgcacgttatctatgatgtgtctcacaacattgccaaagtggagcag
catgtagtggatggaaaggagcggactctgctggtgcacagaaagggatcaaccagggcc
ttccctcctcaccatcctcttattgctgttgattatcaactgactggacaacctgttttg
attggtggcacaatgggcacctgtagctatgtcctcactggcacagagcaaggcatgact
gagacctttggaactacttgccatggagctggtcgtgcactgtctcgagccaagtctcgg
cgtaacttggacttccaggacgtactggacaaactggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccggagtcttacaagaacgtgactgat
gtggttaacacctgccacgaagctggcatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag
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