KEGG   Anomalospiza imberbis (cuckoo-finch): 137475391
Entry
137475391         CDS       T11605                                 
Symbol
TDP1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
aib  Anomalospiza imberbis (cuckoo-finch)
Pathway
aib03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:aib00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    137475391 (TDP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aib03400]
    137475391 (TDP1)
DNA repair and recombination proteins [BR:aib03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     137475391 (TDP1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 137475391
NCBI-ProteinID: XP_068048729
LinkDB
Position
6:complement(17105458..17148148)
AA seq 636 aa
MLQEGAHGKWTVSSSDESAEENSDSEKPCTSSLSDPACGRTSGPQYPCSEARKAAHKRKA
SPLKLTDKSLSTDAPPAVKQRPSQEGSGWCLSSSDEEPEDQKKHIHKETVKEEKCDVPEE
HPLSLCKDDKLLENLKEEEYNVTPSEAQDTWDLVTGGNPFRFFLTKVSGIEQNYNSGALH
IKGEQVASTRRGLLGESKRMLIFGLWVFLNAYILSPLFGTLISSAQFNYCIDVGWLVRQY
PQEFRKKPLLIVHGEKRESKAELIAQARPYENISFCQAKLDIAFGTHHTKMMLLLYEEGL
RVVIHTSNLIAEDWHQKTQGIWLSPLYPRLPKGASSSAGESATNFKSDLISYLAAYNSPA
LKEWIDLIQEHDLSETRVYLLGSTPGRYQGSDKEKWGHLRLRKLLKEHALSIPAHESWPL
VGQFSSIGSMGADGSKWLCSEFQESLVAASSSVTTFRKCDVPIHLVYPTVNNVRQSLEGY
PAGGSLPYSIQTAQKQLWLHSYFHKWSAEVTGRTHAIPHIKTYMRLSPDFQKIAWFLVTS
ANLSKAAWGALEKNGSQMMIRSYELGVLFLPSAFGLDKGYFHVGRGNLPERKDSATYFPV
PYDLPPEQYGCKDQPWIWNIPYTDAPDTHGNMWVPS
NT seq 1911 nt   +upstreamnt  +downstreamnt
atgcttcaggaaggcgcacacggtaaatggacagtatctagcagcgatgaaagtgctgag
gaaaattctgacagtgaaaaaccatgtacgtcttcattgtcagatcctgcatgtggtaga
acaagtggaccacaatatccatgctctgaagctaggaaagctgcccacaagagaaaagct
tctcccctgaagctcactgataaaagtctttctacagatgcacctccagcagtaaaacag
agaccaagccaagaaggctcaggttggtgtctttctagtagtgatgaagaacctgaagat
cagaaaaagcatatccacaaagaaacagtgaaagaagaaaaatgtgatgtgcccgaagag
catcctttgagtctttgcaaagatgacaaactcttggagaacctgaaagaagaggagtat
aatgtaacacccagtgaagcccaggatacctgggatttggtgactggaggcaatcctttc
aggttttttctcactaaagtcagtggaattgaacagaactataattctggagccctgcac
ataaaaggtgaacaagtggcttctactagaagagggcttttgggagaaagcaagagaatg
cttatttttggtttgtgggtatttttaaatgcatatattttgtctcctctttttggaact
ctcatatcttctgcccagtttaactactgtatagatgtgggatggcttgtaagacagtac
ccgcaggaattcaggaagaagccattgctgatagttcacggtgagaagagagaatccaaa
gctgaactaattgcacaagcacggccttatgagaatattagcttttgtcaggctaaactg
gatattgcatttggaactcaccatacgaaaatgatgttgttgctgtatgaagaaggtctt
cgagttgtgatacatacatccaatcttattgctgaagattggcaccagaaaactcaggga
atatggctaagccctttatatccaaggctacctaagggagcatctagttctgctggtgaa
tctgcgactaattttaagtctgacctaataagttacttggcagcttacaattctcctgca
ctcaaggaatggatagatctgattcaagaacatgatttatcagaaacaagagtgtatctg
cttggttctacccctggacgatatcaaggcagtgataaagaaaagtggggccatcttagg
ctcagaaagcttttgaaggagcatgctttgtcaataccagcacatgaatcctggcctctt
gttggacagttctcaagcattggttcaatgggagctgatggatccaaatggctgtgctca
gagttccaggagagcctggtggctgcaagcagcagtgtgacaactttccgtaaatgcgat
gtcccaattcatttggtttatcctactgtgaacaatgtgaggcaaagtctagaaggctat
cctgctggtggctcacttccgtacagtatacagacagcacagaaacagctgtggttgcat
tcctattttcacaaatggtcagcagaagtcacgggtcgaactcatgctatacctcacatt
aagacatacatgagactctctcctgacttccagaagattgcttggttcttggtaacaagt
gccaatctctctaaagcagcctggggagctctggagaaaaatggcagccaaatgatgatc
cgttcgtatgaacttggagttcttttcttgccttcagcatttggattggacaaaggttat
tttcatgtaggaaggggaaatcttccagaaaggaaagattcagcaacatattttcctgta
ccttatgacctcccaccagaacagtatggatgcaaagatcaaccatggatttggaatatt
ccttacactgatgcccctgatacacatgggaatatgtgggttccatcataa

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