Anomalospiza imberbis (cuckoo-finch): 137475899
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Entry
137475899 CDS
T11605
Symbol
RAG1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
aib Anomalospiza imberbis (cuckoo-finch)
Pathway
aib04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
aib00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
137475899 (RAG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aib04121
]
137475899 (RAG1)
Enzymes [BR:
aib01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
137475899 (RAG1)
Ubiquitin system [BR:
aib04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
137475899 (RAG1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1_C
RAG1_ZnC2
RAG1_pre-RNase_H
RAG1
RAG1_DNA-bd
zf-RAG1
zf-C3HC4
zf-C3HC4_2
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
137475899
NCBI-ProteinID:
XP_068049847
LinkDB
All DBs
Position
6:complement(43360993..43365093)
Genome browser
AA seq
1040 aa
AA seq
DB search
MSVVSQMELPEELQHTYTKFSEWKFKLFKLRSFEKTPSDDSQHTHKDQAEEPVSSNKEII
LHKDEAVPRGEKMELTGNRQGLEEDAHAMKTQDNTAHQNNLKQLCRICGVSFKTDCSKRT
YPVHGPVDDETLCLLRKKEKTATSWPDLIAKVFKIDVRGDVDTIHPTQFCHNCWSIIHRK
FSNTLCEVYFPRDSTMEWQPHSPNCDVCHTTRQGVKRKSQLPSMQRGKRVKTTGERAHLN
RGVKNQQLKQAQINNKNLMKEIVNCKDIHLSTKLLAVDYPVDFIKSISCQICDHILADPV
ETTCRHLFCRTCILKCIRVMGSYCPSCWYPCFPTDLVTPVKSFLNILDNLTITCPVKECD
EEISHGKYGQHLSSHKEMKEGELYSYINKGGRPRQHLLSLTRRAQKHRLRELKRQVKAFA
EKEEGGDIKAVCMTLFLLALRAKNEHKQADELEAIMQGRGSGLHPAVCLAIRINTFLSCS
QYHKMYRTVKAVTGRQIFQPLHALRTAEKALLPGYHPFEWKPPLKNVSPNTEVGIIDGLS
GLPLSIDDYPVDTIAKRFRYDAALVCALKDMEEEILEGMKAKNLDDYLNGPFTVVVKESC
DGMGDVSEKHGSGPAVPEKAVRFSFTVMNISIAHGNESKRIFEEVKPNSELCCKPLCLML
ADESDHETLTAILSPLIAEREAMKNSELLLEMGGILRTFRFVFRGTGYDEKLLREVEGLE
ASGSTYICTLCDATRLEASQNLVFHSITRSHAENLERYEIWRSNPYHESVDELRDRVKGV
SAKPFIETVPSIDALHCDIGNATEFYRIFQMEIGEIYKNPDVSKEERKRWQLTLDKHLRK
KMNLKPMLKMSGNFARKLMSKETVEAVCELIKCEERHEALKELMDLYLKMKPVWRSSCPA
KECPELLCQYSYNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWASE
GNESGNKLFRRFRKMNARQSKVYEMEDVLKHHWLYTSKYLQKFMNAHKTLKSQSFTIDSG
GSLGDSLPLEVLENSDSAEI
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtagtgtcacaaatggaactacctgaagaacttcagcatacatatacaaaattt
tctgaatggaaattcaagctctttaaattgcgatcatttgaaaaaacaccctctgacgat
agccagcacacacacaaagatcaggcagaagagcctgtttcttcaaacaaagaaatcatc
ctgcataaagatgaagcagtgccaagaggagaaaagatggagttaacaggcaataggcag
gggcttgaggaagatgcccatgccatgaaaacacaagacaatacagctcatcagaacaat
ctgaagcaactctgccgcatctgtggggtttcatttaaaactgattgttccaagagaact
tacccagtgcatgggccagtggatgatgaaactctgtgccttctcagaaagaaagaaaaa
acagcaacctcttggccagatcttattgctaaggttttcaagattgatgtgcgaggggat
gtcgacactatccatcccactcaattttgtcacaactgttggagtattatacatagaaaa
ttcagtaatactctatgtgaagtgtattttcctagggacagcacaatggagtggcaaccc
cattccccaaactgtgatgtctgccatactaccagacaaggagtcaagagaaaaagccag
cttccaagtatgcaacgtggcaaacgtgtcaaaaccactggggaacgtgctcatctaaac
agaggtgtaaaaaaccaacaactcaaacaagcacagataaacaacaaaaatttaatgaaa
gagattgtaaattgcaaggatatacatctcagcaccaagctgcttgcagttgattatcca
gtagatttcattaaatctatttcttgccagatttgtgatcatattttggcagatccagtg
gaaacaacatgcagacacttgttttgcagaacttgcatccttaaatgtatcagggttatg
ggcagctattgcccctcctgctggtatccttgttttcctactgatctggtaaccccagtg
aaatccttcctgaacatccttgataatctgactataacatgccctgtaaaggaatgtgat
gaagagatctcacatggaaaatatggccaacacctctccagccacaaggagatgaaagaa
ggagagctctatagctacatcaataaaggtggccgaccgaggcagcacctcctgtctttg
acgaggagagctcagaaacatcgtctgagggaactgaaacgtcaagtcaaggcttttgct
gagaaagaagagggcggtgacataaaggctgtatgcatgactttgttcctgctagctttg
agagcaaaaaatgaacacaaacaagcagatgaactggaggctataatgcaagggagagga
tctggacttcatcctgctgtctgtctggccatccgaattaacacgtttctcagctgtagt
cagtatcataaaatgtatagaacagtaaaagctgtcactgggaggcagatcttccagcct
ttgcatgctcttcgcactgctgagaaagccctcctaccaggttatcacccatttgagtgg
aaacctcccctgaaaaatgtatcccctaacacagaagtgggaattatagatggactatca
ggactgccactctcaattgatgattacccagtagacacaattgcaaagagattccgatac
gatgcagccttggtttgtgccttaaaggacatggaggaggagatcttggaaggcatgaaa
gcaaaaaacctggatgactatttgaatggccccttcactgtggtagtaaaagagtcctgt
gatggaatgggagatgtcagtgagaagcatggaagtgggcctgctgtcccagagaaggct
gttcgcttttctttcacagtcatgaacatttctatagcacatgggaatgaaagcaagagg
atctttgaggaagtaaagcccaattccgagttgtgctgtaagcccttgtgccttatgctg
gctgatgaatcagatcatgaaactctgacagcaatcctgagccccctcatagcagaaaga
gaggctatgaaaaacagtgaactgctgcttgaaatgggaggcatcctaagaacatttaga
ttcgtctttagaggtacgggatatgatgagaaactcttgcgggaagtggaagggctggag
gcttcaggttccacttatatttgtaccctgtgtgatgcaacccgcttggaggcatcccag
aatctggtcttccactccataaccaggagtcatgctgaaaatctggagcgatatgaaata
tggaggtccaacccatatcatgagtctgttgatgagctccgtgacagagtgaagggtgtt
tcagccaaaccttttattgagactgttccctccatagatgcattgcactgtgacattggc
aatgcaacagaattctacaggattttccaaatggagattggtgaaatttacaagaatcct
gacgtgtctaaagaggagaggaagaggtggcagttgactcttgacaaacatctcaggaag
aagatgaacttgaagcctatgctgaagatgagtgggaattttgctagaaagctcatgtcc
aaagagactgtagaggcagtatgtgaactaattaagtgtgaggaaaggcatgaagctcta
aaagaactaatggacctttatctgaagatgaaaccagtgtggcgatcctcgtgccctgcc
aaggagtgtccagaactgctgtgccagtatagctacaattcacagcgttttgcagagctt
ttatctacaaagttcaagtacagatatgagggcaagattacaaattatttccacaaaaca
cttgctcatgttcctgaaataattgaaagagatgggtccattggggcctgggcaagtgaa
ggaaatgagtctggaaacaaattgtttaggagattcagaaaaatgaatgccaggcagtcc
aaggtctatgagatggaggatgtcttgaagcaccactggctatatacctccaagtacctc
cagaagttcatgaatgctcataaaacattaaaaagtcagagcttcaccattgattcagga
ggtagtttaggtgactcgttgccactggaggtcttggaaaacagtgattcagcagaaatc
taa
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