Anomalospiza imberbis (cuckoo-finch): 137479154
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Entry
137479154 CDS
T11605
Symbol
TNR
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
aib Anomalospiza imberbis (cuckoo-finch)
Pathway
aib04510
Focal adhesion
aib04512
ECM-receptor interaction
aib04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
aib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137479154 (TNR)
04518 Integrin signaling
137479154 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137479154 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aib00536
]
137479154 (TNR)
Glycosaminoglycan binding proteins [BR:
aib00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137479154 (TNR)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
EGF_Tenascin
Fn3_PBP1
Fn3_Dep-1_3rd
Pur_ac_phosph_N
Fn3_Dep-1_2nd
Fn3_VIN3
Fn3_ROS1
EGF_2
FN3_Tor_3rd
Lzipper-MIP1
TSC22
Motif
Other DBs
NCBI-GeneID:
137479154
NCBI-ProteinID:
XP_068055557
LinkDB
All DBs
Position
9:4720789..4792979
Genome browser
AA seq
1356 aa
AA seq
DB search
MGTDGENPLLRSVVISFNLLLLGAVLKPFECRLEMTTEPAERTAVDEAGGLANCSPPIKE
QPMVFHHIYNINIPLDSCCSSVFKSSAEEVSSEDDRLAEYTEQTSDSESQVTFTHRINMP
KQACKCSTSLPSLQELLSRIEMLEREVSILRDQCTSNCCQENAATGQLDYIPQCSGHGNF
SLESCSCVCMEGWAGSNCSEPRCPGGCSSRGVCLEGQCICDNDYGGEDCSQLRCPAGCGS
RGLCVDGECVCEEGFTGEDCSQLRCPRDCSGRGHCVNGTCVCQEGFAGEDCARLHCPNAC
SGRGVCRDGLCVCRGGYDGQDCSAVSPPENLRVTGISDSSIELAWDGPGAATEYVVSYQP
AVPGGTQLQQRVPGDWSSITITDLEPGVAYNVSIYAVISDVFSIPVTSKVMTNLATPQGL
KFKTVTETTAEVQWEPFSFPFDGWEISFIPKNNEGGVIAQLPSTVTTFNQTGLKPGEEYT
VTIVALKEQARSPPTSDSVSTLIDGPTQILVRDVSDTVAFVEWTPPRAKVDAILLKYGLA
DGEGGRTTFRLQPPLSQYSLQALRPGARYHLAVSALRGANESRPAFAQFTTEIDAPKNLR
VGSRTPASLELAWDNSEAEAHSYRVVYSTLAGEHYHEVLVPRDTGPTTRATLADLVPGTE
YGIGISAVMDSQQSVPATMNARTELDSPRDLLVTASTETSISLAWTKATGPIDHYRITFT
PASGMASEVTVSRDESQLTLSELEPGTEYTISIIAERGRQQSLEATVDAFTGVRPISQLH
FSHLTSSSVNVTWSDPSPPADRLILTYSPRDEEEEAQQVTLDGTRRHTSLTGLQPSTEYL
VSLVAVHGTISSEPVMGSITTGIDAPKDLRVGNVTQESMIIYWSAPIAAFDHYRISYRAA
EGRTESMAISRDATEYTLQDLQPATKYEIGVKSVRGREESELASITAYTAMDVPLGVTAT
NITPTEALLQWNPPLSEVESYVLILTRRAAAGETILVDGDNQEYQLTNLLPSTTYTVSMY
ATSGPLTSQTISTNFTTLLDPPTNLTASEVTRRSALLSWVPPVGEIENYIMTYRSTDGSR
KELIVDAEDTWIRLEGLSETTEYTVHLQAAQNAMRSGLISTTFTTGGRVFANPQDCAQHL
MNGDTLSGVYTISINGDLSQRVPVYCDMTTDGGGWIVFQRRQNGLTDFFRKWADYRVGFG
NLEDEFWLGLDNIHKITSQGRYELRIDMRDGQEAAYAYYDKFSIGDSRSLYKLRIGDYNG
TSGDSLTYHQGRPFSTKDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGIN
WYHWKGHEFSIPFVEMKMRPYNHRNISGRKRRSLQL
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggggactgatggtgaaaacccgctcctgaggagtgtggtcatcagcttcaacttgctt
ctgctgggcgctgtcctcaagccttttgagtgccgtctggagatgacgacagagccagcc
gagaggacggcggtggatgaggcaggtggcctcgccaactgcagcccacctatcaaagag
cagcccatggtcttccaccacatctacaacatcaacatcccgctggacagctgctgctcg
tccgtgttcaagtcttcggccgaggaggtgagttcagaagacgaccggctggcagagtac
acggagcagacctccgacagcgagagccaggtcaccttcacccacaggataaacatgccc
aagcaggcctgcaagtgctccacctccctcccatccctgcaagagctgctgagcaggatt
gagatgctggagagggaggtctccatcctccgggaccaatgcacctccaattgctgccaa
gaaaatgcagccacagggcagctggattacatcccgcagtgcagcggccacgggaatttc
agcctggagtcgtgcagctgcgtgtgcatggagggctgggcaggcagcaactgctccgag
ccccgctgccccgggggctgctccagccgcggcgtgtgcctggagggccagtgcatctgc
gacaacgactacgggggcgaggactgctcccagctgcgctgccccgccggctgcggctcc
cgcgggctctgcgtggacggcgagtgcgtgtgcgaggagggtttcaccggcgaggattgc
tcccagctgcgctgcccccgcgactgctcgggccggggccactgcgtgaacggcacctgc
gtgtgccaggagggcttcgccggcgaggactgcgcaaggctgcactgccccaacgcctgc
agcggccggggcgtctgccgggatgggctctgcgtctgccggggaggctatgacgggcag
gactgctcagcagtgtctcctcctgagaacctgcgggtgacggggatcagcgacagctcc
atcgagctggcttgggacggccccggggcagccaccgagtacgtggtctcctaccagccc
gcggtgccaggcggcacccagctccagcagagggtgcctggggactggagcagcatcacc
atcacggatctggagccaggtgttgcctacaacgtcagcatctatgcagtcatcagtgac
gtcttcagcatccccgttacttccaaggtgatgactaaccttgccacaccgcaggggctg
aagttcaagaccgtcacagagacaacggcagaggtgcagtgggagcccttctccttcccc
ttcgacggctgggagatcagcttcattcccaagaataatgagggtggtgtgattgcccag
ctccccagcaccgtcaccaccttcaaccagacggggctgaagcctggggaggagtacacc
gtcaccatcgtggccctgaaggaacaagccagaagccctcccacatccgacagcgtctca
accctcatcgacggcccgacgcagatcctggtgcgggatgtctccgacacggtggccttc
gtggagtggaccccgccgcgcgccaaggtggacgccatcctgctgaagtacgggctggcg
gacggggagggcggcaggaccaccttccgcctgcagccccccctcagccagtactccctg
caggccctgcgccccggcgcccgctaccacctcgccgtcagcgccctccggggtgccaac
gagagccggccagcctttgcccagttcaccacagagatcgatgcccccaagaacctgcgg
gtgggctcgcggacccccgccagccttgagcttgcctgggacaacagcgaggccgaggcg
cacagctacagggtggtctacagcaccctggccggggagcactaccacgaggtgctggtg
ccgcgcgacaccggtcccaccacccgggccaccctcgcagatctggtgccgggaacggag
tatggcatcgggatttcagccgtgatggacagccagcagagtgtgccagcgaccatgaat
gccaggacggagcttgacagcccccgggacctcctggtgacagcctccactgagacgtcc
atctcactggcttggaccaaagccacgggtcccatcgaccactaccgcatcaccttcacc
cctgcctcaggaatggcctctgaagtgacagtgtcccgggatgagtcacagctcaccctc
tcagagctggagcctgggacagagtacactatctcaatcatcgctgagaggggacggcag
cagagcctggaggccactgtggatgccttcacaggtgttcggcccatctcacagctgcac
ttctcccacttgacatcctccagtgtaaatgtcacatggagtgacccatccccaccagca
gaccgccttatcctcacctacagcccccgggatgaggaggaggaggcacagcaggtcaca
ctcgatggcacccgcaggcacaccagcctgacgggcttgcagccatccaccgagtacctg
gtgtccctggtggccgtgcacggcaccatcagctccgagcctgtcatgggctccatcaca
acagggattgatgcaccaaaggacctcagggtgggcaacgtcacccaggagtccatgata
atctattggagtgctcctatcgctgccttcgaccactataggatatcctaccgtgctgcc
gaaggaaggacagagagcatggccatctccagggatgccaccgagtacaccctccaggac
ctgcagcctgccaccaagtatgagattggggtgaagagcgtgcggggccgggaggagagc
gagctggcctccatcactgcgtacacagccatggatgtccctctgggggtcacggccacc
aacatcactcccactgaggcgctgctgcagtggaacccgccactgtcagaggtggaaagc
tatgtcctcatccttacacgtcgtgcagctgcaggagaaacaattctcgtggatggagac
aaccaggagtaccagctgaccaacctgctgcccagtaccacctacacagtgtctatgtat
gccaccagcgggcctctcaccagccagaccatcagcaccaacttcactactcttttggat
cctccaacaaatctgacagccagtgaagtcacacgacggagcgccctgctgtcctgggtt
cctcccgtgggagagatcgaaaattacatcatgacctacaggtccaccgatggcagccgg
aaggagctgattgtggatgctgaggacacgtggatccgtctggaggggctttctgagacc
acggagtacacggtgcacctgcaagctgcccaaaacgccatgcggagcggcctcatctca
accaccttcaccacaggaggacgtgtctttgctaaccctcaggactgtgcccagcacctg
atgaacggagacacgctgagcggggtctacaccatctccatcaacggggacctcagccag
cgtgtgcccgtgtactgcgacatgaccaccgacggaggcggctggattgtcttccagcgg
cggcagaacgggctgactgatttcttccggaaatgggcagattaccgggttggctttgga
aacttggaggatgagttttggctgggcttggacaacatccacaagatcacgtcccaaggg
cgctacgaactgcgaatagacatgagggatggtcaggaggcagcatacgcctactatgac
aagttctccattggcgactcccggagcctctacaaactgcgaatcggggactacaatggc
acttcaggagactccctcacctatcaccagggacgccccttctccaccaaggacagggac
aacgatgttgctgtgacaaactgtgccatgtcctacaaaggggcctggtggtacaagaac
tgccaccgcaccaacctcaacggcaagtacggagagtcccggcacagtcaggggattaac
tggtaccattggaaaggccacgagttctccatcccctttgtggaaatgaagatgcgacct
tacaaccaccgtaacatctctgggaggaagagacggtccctacagctctga
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