Anomalospiza imberbis (cuckoo-finch): 137479204
Help
Entry
137479204 CDS
T11605
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
aib Anomalospiza imberbis (cuckoo-finch)
Pathway
aib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aib00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137479204 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aib03019
]
137479204 (SMG7)
Messenger RNA biogenesis [BR:
aib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
137479204 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
137479204 (SMG7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
137479204
NCBI-ProteinID:
XP_068055613
LinkDB
All DBs
Position
9:complement(7649647..7700942)
Genome browser
AA seq
1193 aa
AA seq
DB search
MSLLCAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRSNPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTRWSVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHITVI
NLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGVLCKCPLQNDYQEDSGAAYP
LPAVKVSMDWLKLRPSVFQEAVVDERRYIWPWLISLLNSFQPHEEDLSSNNATPLPEEFE
LQGFLALRPSFRNLDFSKGHQAITGDKEGQQRRIRQQRLIFTGKWIADNQPRLIQCENEV
GKLLFVTEIPELLLEDPSEAKESLALQETSMAEPLCADGSPGLKSVLSSGRSLSNSCDAG
EKPMVTFKENIKPREMNREQGRIYPPKDIARERRDFSKGIVANKNDGKKDNNKRKNETKK
CGLDKMQEAGKQNVAVQVKSQSEMRKTPVSEARKTPVTQTPSQASSSQFIPIHHPGAFPP
LPSRPGFPPPTYVVPPPVAFSMSTGYTFPGGVSVPGTFLQPTPHSPAGNQVQGGKQSHIP
YSQQRPSGPGPMTQGPQQTPPPSQQSLSSLPAQATAQSASQLQVQALAQQQQSPTKAVQG
LGKSPPHHSGFQQYPQTDSSKQLWNPPQVQGSLGKIMSVKQPYYLQAQDPLKLFEQSLQP
PVMQQQPLEKKMKPFPMEPYNQNPSEVKVPEYYWDSSYGMTDNRVMTQQSNMDRRGKRQG
VFRSEQDAVSRMTFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLGPLASLP
GRSLFKSLLEKPSELMSQSSSFLSLSGFSLNQERYPNNSMFNEVYGKNINTSTKTEVTPS
VAHQETSLYSLFEGTPWSPSLPASSGNPDHSTPASQSPHSSNPSSLPSSPPTHNHNSVPF
SNFGPIGTPDNRDRRVADRWKTDKPAMGGFGLDYLPTTSSSSESSWHQSSAPSGTWAVQG
PPAMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGAMNPPH
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctgtgcgcgcagtatctccggcaggcagaagtcctgaaggctgacatgaca
gattcaaagctgggtccagcagaagtctggacatccagacaggctctacaggacttatat
caaaaaatgctagtgactgatttggaatacgctttggataaaaaagtggagcaggacctt
tggaatcatgcctttaaaaatcaaatcacaacactccagggtcaggcgaaaaacagatca
aatccgaatcggagcgaagttcaggcgaacctttctctgtttttagaggcagctagtggc
ttctacacacagttactacaggaattgtgcacagtttttaatgtagacctgccgtgccgt
gtgaagtcttcccagctggggatcattagcaataaacagacgcacaccagcgccattgtg
aagccgcagtccagctcctgctcctacatctgccagcactgccttgtccacctgggagat
attgctcgctataggaatcagaccagccaggcagagtcttactatagacatgcagctcag
cttgtcccttctaatggtcagccttataatcagttggctatcctagcctcctccaaagga
gaccacttgaccacaattttctactactgcagaagcattgctgtgaagtttcctttccca
gctgcctccactaacctacaaaaagcactttctaaagcactggaaagtcgtgatgaggtg
aagactcgatggagcgtgtctgacttcatcaaggcatttattaaatttcatggccatgtg
tacctgagtaagagcttggagaagctgagccctcttcgagaaaagctggaagaacagttc
aagaggttgttgttccagaaggccttcaactctcagcaattagtccatattactgtgatc
aacctgttccagctgcaccacctgcgagacttcagcaacgaaacagagcagcacagctac
agccaggatgagcagctctgctggacacagctcctggctctcttcatgtcatttcttgga
gttctgtgcaagtgtcctttacaaaatgattaccaggaggactctggggctgcatatcct
cttccagctgtgaaggtttcgatggactggctgaaacttaggcccagtgttttccaggag
gcagttgttgatgaaagacggtacatatggccctggctgatctctcttctaaatagtttc
cagcctcatgaagaagatctatccagtaataatgcaaccccccttccagaagaatttgag
ttgcaaggattcctggctctgaggccctcgttcaggaacttggatttttccaaaggccac
caggcaattacaggggataaagaagggcagcagcgtcggatacggcagcagcgcctgatc
ttcacaggcaaatggattgctgataaccagccaaggttgattcagtgtgaaaacgaggta
ggaaagctcttgtttgtgacagaaatcccggagctcttactggaggaccctagtgaagcc
aaagagagtctcgccttgcaggagacgtccatggcagagccgctgtgcgctgatgggagc
cctggactcaaatcagtgctgtcctctggcagaagcctgagcaacagctgtgatgcagga
gaaaaacccatggtcaccttcaaagagaatatcaagccccgggagatgaacagagaacaa
gggcgcatctaccccccaaaggacatagcgagggagagacgggactttagcaaaggaata
gtagcaaataagaatgatgggaagaaggataacaataaaaggaagaatgagaccaagaaa
tgcggcttggataagatgcaggaagcaggaaagcagaatgtggcagttcaggtgaaatcc
caatcggagatgaggaagactccagtatctgaagccaggaaaacacctgtaactcagact
ccaagccaggccagcagttcccagttcatccctattcatcacccaggagcctttcctccc
cttcctagccggccaggatttcctcctccgacctatgttgttccccctcctgtggctttc
tccatgagcacggggtacaccttcccaggtggtgtttctgtcccaggaaccttcctccag
cccacacctcactcgcctgcaggaaaccaggtgcaaggtgggaaacagtcccacattcct
tacagccagcaacggccctctggaccagggccaatgacccagggacctcagcaaacacca
cctccttcccagcaatccctctcatctttaccagctcaggcaacagcacagtccgcaagc
cagttacaggtccaagctctggcccagcagcagcagtcccccacgaaagctgtgcagggc
ctggggaagagcccgccacaccactctggattccagcagtatccacagacagactcgtcg
aagcagctctggaacccccctcaagtccaaggctccctggggaagatcatgtctgtaaag
cagccctattacctgcaggcccaggaccctctcaaactctttgaacagtcattacagcct
cctgtgatgcaacagcaacctctggagaaaaaaatgaagcctttcccaatggagccatat
aaccagaacccctcagaagtcaaggtgccagaatattactgggactcttcctatggcatg
acggacaacagggtgatgacccagcagtcgaacatggaccgccgggggaagcggcaggga
gtcttccgctccgagcaggatgctgtctccaggatgacctttgaggaccccaagagctcc
cctctgcttcctccggacctgttaaagagtctggctgccttggaggaggaggaagagctg
attttctctaatcctcccgatctttacccagctctgctggggcctctcgcctctcttcct
ggacgaagcctctttaagtccctgctggaaaaaccatcagaattgatgtctcagtcatca
tctttcctgtccctcagtggcttttctctaaatcaggaaagatatccgaacaacagtatg
ttcaatgaggtatatggaaaaaacatcaataccagcacaaaaacagaagtcaccccttca
gttgcccatcaggagacctcactctattctctctttgaagggactccgtggtctccctcc
cttccagccagctcaggtaatcctgatcattcaacaccagccagccagtctcctcactcc
tccaaccccagcagcttgccaagctcccctccaacccataaccacaattctgttcctttc
tccaactttggacccattgggactccagacaacagagaccggagagtcgcagaccgctgg
aaaacagataagccagcaatgggagggtttggtctggactatctcccaacaacgtcatcc
tcttcggagagcagctggcaccagtccagtgctcccagtggtacctgggcagtccaaggc
cctcctgccatggaggactcttcagctgtgcttatggagagcctgaagtccatctggtcc
agttccatgatgcaccccggcccctcggccctggagcagctgttgatgcagcagaagcag
aagcagcagcgcggacaaggtgccatgaatccgccacattga
DBGET
integrated database retrieval system
