Anomalospiza imberbis (cuckoo-finch): 137479219
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Entry
137479219 CDS
T11605
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
aib Anomalospiza imberbis (cuckoo-finch)
Brite
KEGG Orthology (KO) [BR:
aib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aib03000
]
137479219 (RC3H1)
04121 Ubiquitin system [BR:
aib04121
]
137479219 (RC3H1)
Transcription factors [BR:
aib03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
137479219 (RC3H1)
Ubiquitin system [BR:
aib04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
137479219 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
137479219
NCBI-ProteinID:
XP_068055635
LinkDB
All DBs
Position
9:complement(7934818..7997399)
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AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSGYESALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARVPADLPSVSVTKQLQMVPRGSQLYSAQQADMFYQDPRGA
APSFEPAPYQQGVYYPTQSMSRFVRPPPSAPEPGTPYLEHYGPYLPERVVSPQYPQPQGY
PTLAQPVYPPHYDGRRVYPPVQPYQREDVVRGSPVPIDIPQAAVPLYVPESRDRYQQTEA
YCPVAPHLGQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSE
EIFVFVQYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANV
DSKTMREQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQG
AAAKSIISDYSPYETHGGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAERE
QQLRMELQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQ
LSLELHQVEREIGKRTRELSMESQSSLDMKNKLGTTKQTENGQLEPQNKVPAEDLTLTFS
SDVPNGSALTQENIGLLSNNMASLSLSEDPEGGGDGHDSQRAGVTPTSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccgatttgcacacagact
ttcgacgaaaccatccggaagccaatcagcttgggctgtggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgtccctttgaccagaccactatcaacacggac
attgaactccttcctgtgaactcagccttgctgcaacttgtgggtgctcaggttcctgag
cagcagccaattactttatgcagtggagctgaagataccaagcattatgaggagggcaag
aaatgtgtggaagaattggcattgtacctcaaaccactcagtagtgcaagaggtgtgggt
cttaacagtactactcagagtgtgctgagtcgtcccatgcagaggaagcttgtgacatta
gtgcattgccagctggtggaagaggaagggcggatcagagccatgcgtgcagcacggtcg
ctgggtgaaagaacagttacagagctcattcttcagcatcaaaaccctcagcagctctcc
tccaacctctgggctgcagtgagagccagagggtgccagttccttgggccagcaatgcaa
gaggaggctctaaagctggttctgctggctttggaagatggatctgctctgtcacgaaag
gtcttggttctctttgtggtgcagagactggagccacgattccctcaggcttccaagact
agcattgggcatgttgtccagctcctttacagagcctcatgcttcaaggtgaccaagcga
gatgaggattcctccctgatgcaactgaaggaggagtttcggacttacgaagctctgaga
agggaacacgattcccagatagttcaaatagctatggaagcgggtttgcgcattgcacca
gaccagtggtcctcgctgttgtatggagaccagtctcacaaatcccacatgcagagtatc
attgacaagttgcagaccccggcctcgtttgcacagagtgttcaggaattaactattgct
cttcagaggactggagatccagctaacttgaatcgtcttagacctcacctagagctccta
gcaaatattgatcccagtccagatgctccacccccaacgtgggaacagctggaaaatgga
ctagttgctgtgaggactgtggttcatggcttagttgattatatccagaatcacagcaaa
aaaggaacagatcaacaacagccccctcagcacagcaagtacaagacatacatgtgccga
gacatgaagcagagaggagggtgtccccggggggccagctgcaccttcgcacactcacag
gaggagctggaaaaattccgtaaaatgaacaagcgtctcgttcccagaagaccccttagt
gcctccctgggccagctgaatgaggtgggcctgccttcaggagctatcctctcagaggaa
gggggagtggacttgcccaataggaaaacttctgctctgccaaatggaattgtgtcaaca
ggcagcacagtgacacaactgatttctcgagggactgactccggttacgaaagtgccctg
aagccggggaagatggaccatctgagtagcagtgcccctggatcccctcctgacttgctg
gaatctgttcccaagagctctatttctgccttgccagtgaaccctcatcctgtgcctgct
cgggtgccagcagatctgccctcggtgtctgtcaccaagcagttgcagatggtaccacga
gggtctcagctgtacagtgcacaacaagcagatatgttttaccaagaccccagaggggct
gccccatcgtttgagccagcgccctaccaacaaggagtgtactatcccactcagtccatg
tctcgctttgtccgacctcctccatcagcaccggagccgggtacgccgtacctggagcac
tacgggccgtacctgccggagcgagtggtgagcccgcagtacccgcagccgcaggggtac
ccgaccctggcacagcccgtgtacccgccacactacgacggccgccgcgtgtaccccccc
gtgcagccctaccagcgggaggacgtggtgcggggcagcccggtgcccatcgacatccca
caggcggctgtgcccctctacgtacctgagtccagagacagataccagcaaacagaggct
tactgcccagtggctccacatcttggtcagatcagaccttcgtgccacaggcctcatccc
agcctggatgaacttcaccgacgaaggaaagagataatggctcagctggaagagaggaag
gtgatttctccacctccttttgcaccatcaccaaccttgcctcatccttttcactcagag
gagatttttgtttttgtacagtacttggatgaagacctgaaggtagctgggaaatacaaa
ggaaatgactacagccagtactctccctggtcctgtgacaccatcggctcctacattgga
accaaagatgcaaaacccaaagatgttgtggcagcaaggagtgtggagatggcgaatgtg
gatagtaaaaccatgcgtgagcagcgactggacatgcagcgacgagcggccgagacgggg
gacgatgacctcattccatttggagaccgaccaactgtgtcgagatttggggccatctct
cgtacttccaaagccatgtaccagaactctgggcccatgcaggccatggcggttcaggga
gctgccgccaaatccatcatttcagactacagtccttatgaaacccacggtggctgggga
ggctctccatattctcctcaccaaaatataccttctcagggacgtttcaatgacagggag
aggctgtccatgtcagatgtggctggtcacgggaagcagttgccctcagctgaacgagag
cagcagctgcgcatggaactgcagcaagttgaccatcagatcagccagcagacccaaatg
cggggactggaggctgttagtaacaggctgctgttgcagagagaggcgactaccctggca
ggccaaccacagcccccacccccacctcccaagtggcctgggatgatctcaagtgaacag
ctgagcttggagctacaccaggtggaaagggaaattgggaagagaacccgtgagctgagc
atggagagccagtcttcactggatatgaaaaacaagctgggcaccactaaacagacagaa
aatggacaattagaaccacaaaacaaggttccagctgaggaccttacactgacgttcagc
agtgatgttccgaatggatcagctttgacccaagagaacattggcctcctgtcaaacaat
atggcatctctcagcttgtcagaggaccccgagggaggaggagatggccatgactcccag
cgagcgggagtgacacccacatctgctccatga
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