Anomalospiza imberbis (cuckoo-finch): 137482526
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Entry
137482526 CDS
T11605
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
aib Anomalospiza imberbis (cuckoo-finch)
Pathway
aib04382
Cornified envelope formation
aib04510
Focal adhesion
aib04512
ECM-receptor interaction
aib04518
Integrin signaling
aib04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137482526 (COL4A6)
04518 Integrin signaling
137482526 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137482526 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
137482526 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
137482526 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aib04147
]
137482526 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
aib00536
]
137482526 (COL4A6)
Exosome [BR:
aib04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
137482526 (COL4A6)
Glycosaminoglycan binding proteins [BR:
aib00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137482526 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
137482526
NCBI-ProteinID:
XP_068060997
LinkDB
All DBs
Position
14:complement(11564335..11651560)
Genome browser
AA seq
1676 aa
AA seq
DB search
MSYLVGGKKSYSGPCGGRNCSAGCKCFPEKGARGRPGPIGLQGPIGAPGFTGPEGLPGAK
GERGAVGPPGPAGQKGDKGPMGVPGFQGINGIPGHPGQSGPRGPPGLDGCNGTTGSRGIA
GPDGFPGLPGLPGRPGPKGLKGEPVFAQGSLKGMKGENGLPGLDGVPGPKGFPGPIGPAG
PIGLPGLQGPVGPPGPPGPKGNMGLGFQGEKGEKGDVGLPGPPGPPPSTGILEFMGFPKG
KQGEKGEPGPQGFPGDQGLPGIPGFGGVGEKGEKGVPGLPGGRGLLGLDGSEGIPGRKGH
PGVPGYPGLDGVEGMKGELGDMGPPGPPVIIDREGVVISGAPGDPGNPGIPGPPGDEGII
GLPGLPGAPGFPGLERDGMGPGGSPGIPGVKGEVGEPGRATIGIPGPPGRGGLPGLPGAP
GLPGSPRPSFSPVIILSGRTGAPGEPGQRGLPGALGPKGYKGEAGDCACDGGVTRAGLKG
ISGPPGPSGSPGVPGAKGLGGDPGSVGAPGLRGPPASAGQQGPPGLKGEKGEPSYATVKG
ARGDRGATAPRGPSGIPGAPGRDGLPGLPGPPGPPGDGGLGFPGEKGLPGLPGSKGHRGE
TGSPGIGYPGPSGVRGPPGDSGMDGFPGQAGLPGPPGVTLPCIVPGAYGPPGTPGFPGLP
GPKGSKGFSGIPGQPGLHGSKGQPGSPGIIGLQGEPGFPGPRGEQGSQGLPGLDGTDGLP
GKMGPSGLAGIKGALGDVFGAESGTVGERGRPGLPGDKGLTGDTGFPGPKGLDGRPGLLG
VKGEQGHPGYSGLPGLRGPPGPGGPFGIRGKPGPLGSAGLAGAPGPPGVKGVAGDVGPQG
PAGMKGFPGLDGAPGSPGERGLLGPPGPFGQDGHPGFSGPKGEKGSSGLLGFPGMPGLPG
VPGVNGFKGIPGTAGGKGSPGVVGLQGQKGDRGDIGPPGLPVLGTSEQALQIKGDKGDPG
LAGLGGFPGPRGDKGISGSRGQPGLPGPVGSPSKERGLHGDPGFPGPPGQPGLPGQKGAH
GIMGFPGMPGERGSDGTTGTLGFPGPIGLPGPKGERGESVGVPGTAGLKGERGDPGFPGE
RGREGLKGEPGYPGNTGVNGPKGSPGDLGQEGPAGIPGNAGLRGAPGPPGPPGQPGSVGF
PGARGTVGPKGFHGFPGLNGLNGLPGTKGSPGTPGLSEAGLKGPAGLPGTKGEEGSPGLG
RGAAGFPGPKGSSGDMGPPGPMGLPGLPGTPGVSLPSDIRGRPGDAGVPGTDGSSGFPGP
PGPRGPPGPASDQGDTGTPGFPGVLGLRGIKGDAGPTGPIGLPGASGFKGARGEPGLMGM
PGKDGPPGDPGYAGLKGEMGHRGPPGRPGAPGITPQPEEVTAPAGLPGLPGIDGVPGFDG
DPGFHGPAGKPGPKGLPGRSGLKGRDGFPGTPGIAGDPGLSGAPGPQGFEGVAGKPGPLG
LPGMPGRSVGVGYTLVKHSQSDQIPPCPIGMNKLWDGYSLLYVEGQEKSHNQDLGFAGSC
LPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPVDSVQIPQYISRCSVCEAPS
QAVAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIE
CNGARGTCHYFANKYSFWLTTVEQEQQFVSAPPSETLKAGQLRTRVSRCQVCMKNL
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgagttatttggtgggtggaaagaagtcctacagtgggccatgtgggggccgcaattgc
agtgctggatgcaaatgttttccagagaagggtgcacggggtcgaccaggaccaattggg
cttcaaggaccaataggagcaccgggatttactggcccagaaggtttgccgggagcaaaa
ggtgagagaggagcagtgggccctcctggaccagctggacagaaaggtgacaagggtcca
atgggagttccaggattccagggcatcaacgggatcccaggtcaccctgggcagtctgga
ccccgaggcccgcctggcctcgatggctgcaatggcaccactgggagtcgtggcattgct
ggacccgatgggtttcctggcctacctggactgcctggtcgtcctggcccaaaaggcctt
aaaggagaacctgtttttgctcaaggcagtcttaaaggaatgaagggtgaaaatggtctt
cctggattggatggagttcctggcccaaaaggttttccaggtccaataggtcctgcaggc
cctataggattaccaggtttgcagggtccagtgggtccccctgggccaccaggtccaaaa
ggtaacatgggattgggctttcaaggagagaaaggagaaaagggcgatgtggggctgcct
gggcctccaggtcccccaccatccactggaatactggaattcatgggatttccaaagggg
aagcaaggagaaaagggtgagccgggtcctcaaggattccccggagaccaaggattgcct
ggcatcccgggctttggaggtgttggagaaaaaggagaaaaaggtgtgcctggcttacca
ggtggcaggggtcttttgggactggatggatctgaaggaattccagggagaaagggccat
ccaggtgttccaggctatccaggactggatggagtagaaggcatgaagggtgaattaggt
gacatgggtcccccaggtccgcctgtcattatcgacagggaaggtgtagtcatttcaggt
gccccaggtgaccctggcaacccaggaatacctggtcctccaggagatgaagggatcatt
ggtttaccaggccttccaggggctccagggtttccaggcctggagagagatggaatgggc
cctggagggtctccaggtattccaggagtgaagggtgaagtgggagaaccaggaagagca
acaattggaataccaggccctcctggcagaggtggtttaccaggtctgccaggggcacca
ggattgcctggttcaccacgcccttcattctccccagtgataatcctgagtggaaggact
ggggccccaggggagcctgggcaaagagggctgccaggagctttgggtcccaagggctac
aaaggagaggcaggtgattgtgcttgtgatggaggagttacgagagctggactaaaaggc
atctcaggcccaccaggtccgtcaggaagccctggtgtacctggtgccaagggccttggt
ggagacccaggctctgtgggagcaccaggactgcgtggccctccggcttcagctggtcag
caaggacctccaggccttaagggagaaaaaggggagccatcctatgcaacagtcaaaggt
gctcgtggggaccgtggtgcgacagcacccagaggaccttcaggcatcccaggagctcca
ggcagggatggacttccaggcttgccaggcccaccaggccctccaggtgatggtgggctg
ggtttcccaggtgaaaaaggtctgccaggattacctggctccaagggccatcgaggagaa
actggttctcctggcattggatacccaggccctagtggagttcgtggaccaccaggtgac
agtggaatggatgggtttccaggacaagcaggtcttccaggccctccaggtgtcaccttg
ccctgcatagttcctggagcatatgggcccccagggactcccggctttccaggactgcca
ggtcccaaaggcagcaaaggcttttctggcattccaggccaacctgggttacatgggtct
aaaggacagccagggtctccaggaataataggcttgcaaggggaacctggcttccctgga
cctcgaggagagcaaggctcacaaggacttccaggactggatggaacagatggtttgcct
gggaaaatgggtccttcaggcttagctggaattaaaggagctcttggagatgtatttggt
gctgagagtggaaccgtgggagagcgtggccgacctggacttccaggtgataaagggctt
acaggtgatactggatttccaggaccaaaagggctggatggaagaccgggcctcctgggt
gttaaaggtgaacagggtcatccaggatattcaggtctccctggattgcggggtcctcct
ggccctggaggcccttttggcattaggggaaaaccaggacccttggggtcagctggcctt
gcaggagcaccaggacctcctggagtcaaaggagtggctggggatgtaggaccacaaggc
cctgctggtatgaaaggcttcccaggtcttgatggtgctccaggatctcctggggaaaga
ggattgttagggccacctgggccttttggtcaagatggacatccaggtttctctgggcca
aaaggtgagaaagggtcttctggcctgcttggttttcctggcatgccaggactgcctggt
gtccctggagtgaatgggtttaaaggaattcctggcacagctggaggaaaaggaagtcca
ggagttgtgggacttcaaggtcaaaaaggtgacagaggtgatataggtccacctggtctt
cctgttcttgggacttcagaacaggcactgcaaatcaaaggagacaaaggagatcctgga
ttagctggacttggaggattcccaggacctagaggtgataaaggaatctcaggaagccgt
ggacagcctggtctccctggtccagttgggtcaccaagcaaagagagaggtcttcatggt
gacccaggcttccctggtccacctggacagcctggcctgccaggacagaagggtgcacat
ggtatcatgggatttccagggatgccaggagagaggggttcagatggcaccacaggaacg
cttggattcccaggacctattggccttcctggtccaaagggtgaacggggagagtctgtt
ggtgttcctggcactgctggactaaaaggagagagaggagatccagggtttccaggagag
agggggagagaaggactcaagggtgagccaggctatccaggaaacactggggtgaatgga
cccaaaggcagcccgggagatcttggccaagaaggaccagcaggaatccctggaaatgct
gggctgagaggagcccctggcccaccaggacccccaggacagccaggatctgttggattc
cctggagctcgtggaacagtgggacctaaaggctttcatggatttccaggtttaaatggt
ctgaatggcttgccaggcacaaaagggtctcctggaacaccaggtctgagtgaagctgga
ctgaaaggacctgcaggcctcccaggtacaaagggtgaagaaggctctccaggcttggga
agaggagctgcaggattccctggaccaaaaggctcatcaggagacatgggtccccctggt
cctatgggactgcctggcctgccaggaacacctggagtttctcttccatctgatatacgg
ggcagacctggagatgctggtgttccaggcactgatgggagttcaggttttccaggtcct
ccaggaccacgagggccccctggcccagcttctgaccaaggtgacacaggcactccaggt
ttccctggtgttcttggcttgcgaggcattaagggtgacgcgggacccactggtccaatt
gggctccctggagcatctggattcaaaggtgcaagaggtgagcctggcctaatgggcatg
ccgggtaaagatgggcctccaggggatcccggttatgccgggctgaagggtgaaatgggc
catcgaggtccccctggcagaccaggggctccaggaataaccccacagccagaagaagtc
acagcccctgcaggattacctggtctgccaggaattgatggtgttcctggctttgatgga
gatcctggattccatggcccagctggaaaaccaggtccaaaaggtttgccaggaagatct
ggtctgaaaggacgtgatggctttcctggaacccctggcatagctggagatccaggactt
tcaggtgccccaggaccacagggatttgaaggtgttgctgggaagccgggtcccctcggt
ttgccgggaatgcccggccggagcgtgggcgttggatacactctggtgaagcacagtcag
tcagaccagatccccccgtgtcccatagggatgaataaactctgggatggctacagctta
ttgtatgtggagggacaggagaagtcacacaaccaggacctgggttttgctggctcatgt
ttgcctcgcttcagcaccatgccttttatttactgcaacatcaatgaagtgtgctactat
gccagccgaaatgacaagtcctactggctctccaccactgctcccatccccatgatgccc
gtggacagcgtccagatcccgcagtacatcagccggtgctctgtgtgtgaagcaccttcc
caggctgtggctgtgcacagccaggacatcaccatcccacagtgtcccctgggctggcgc
agcctgtggataggatactccttccttatgcacactgcggcaggggcggaaggtggaggc
cagtcccttgtctcacctggctcctgcctggaggatttccgagccactccattcatcgag
tgcaatggtgctcggggaacgtgccattactttgccaacaagtacagcttctggctgacc
acggtggagcaggagcagcagtttgtcagtgctcctccctcagagactctgaaagcgggg
cagcttcggactcgcgtcagccgctgccaggtgtgcatgaagaacttgtag
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