Anomalospiza imberbis (cuckoo-finch): 137485874
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Entry
137485874 CDS
T11605
Symbol
SMG8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
aib Anomalospiza imberbis (cuckoo-finch)
Brite
KEGG Orthology (KO) [BR:
aib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aib03019
]
137485874 (SMG8)
Messenger RNA biogenesis [BR:
aib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
137485874 (SMG8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
137485874
NCBI-ProteinID:
XP_068066735
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All DBs
Position
20:8530122..8534801
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AA seq
965 aa
AA seq
DB search
MPPPGAGPPGAMGTAVGPMSLRELLLAAEAGGAAGGEEEVCVVGIFGKTALQLCSEKEAL
VSTVCDRQVFPLFPEEDPELADGAAGQEGDPATKDYNQLQAYYSQESRVLYLVLTSICDT
PQLLRACGDLAAAENREAGPGHPSGGPAPLPHAEAHEFWKHQEKLHCLSLLYLFSVCHIL
LLVHPTCSFDITYDRVFRALDGLRQKVLPSLKAAIKDCPVGKEWKLNCRPCPPRLLFLFQ
LNGALKVDPLPSRGQDPCGHLEKPPPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINC
LFTVPANQAFVYIVAGGPQDGDDPVAMLLDQLRSNCTMRETDSLLAPTLSGPRRYQMMRH
GRQQLSFHAESSSSSSSGQLVDCTLKEFLWQHVELVLSKKGFEDSVGRNPQPSHFELPTY
QKWVAAALKLYEVTIEGKDDDPTCGELSSKIMSSIKVLEGYLDIDTKFSENRCQKALPMA
HSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHKYAMQLNEDCYKFWSNGHQLCE
ERSLTDQHCVHKFHLLPKAGEKPEADRNPPILYHNSRARSTGACNCGRKQAPREDPFDIK
AANYDFYQLLEEKCCGKLEHINFPIFQPSTPDPAPARDEASPAPPEGEIEKLKEKEPQTQ
GESTGLSLALSLGQSTGSLGTYPPDAQGGGDNAESHGQSGDSKSEKRPSLVDRQASTVEY
LPGMLHSNCPKGLLPKFSSWSLVKLGPAKAYNFHTGLDQQGFIPGTNYLMPWDIVIRTRT
EDEGDLDTNSWPAPNKAVPGKRSAVVMGRGRRRDDIARAFVGFEYEDARGRRFMCSGPDK
VMKVMGGGPKESALKALNSDMPLYILSSTQGRGLKPHYAQFMRLFVVVPDAPLQITLTPQ
VQPGPPPCPIFYPEKQEITLPSDGLWVLRFPYAYVTERGPCFPPKESQQLMSYKVLRGIL
KAITQ
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgcccggggccgggccgcccggggccatgggcacggccgtggggcccatgagc
ctgcgggagctgctgctggcggccgaggcgggcggcgcggcgggcggcgaggaggaggtg
tgcgtggtgggcatcttcggcaaaaccgcgctgcagctctgctccgagaaggaggccctg
gtgagcaccgtgtgcgaccggcaggtgttcccgctgttcccggaggaggatcccgagctg
gcggatggcgccgcggggcaggagggggacccggccaccaaggactacaaccagctgcag
gcgtactacagccaggagagccgcgtgctgtacctggtgctcacctccatctgcgacacg
ccgcagctgctgcgcgcctgcggggacctggcggcggccgagaacagagaggccgggccc
ggccacccctccggaggcccggccccgctgccccacgccgaggcgcacgagttctggaag
caccaggagaagctgcactgcctgagcctcctctacctcttctccgtgtgccacatcctg
ctgctggtgcatcccacctgctccttcgacatcacctacgaccgcgtgttcagggcgctg
gacgggctgcggcagaaggtgctgccctccctgaaggctgccatcaaggactgccctgtc
ggtaaggagtggaagctcaactgcaggccgtgccctccacgcctcctcttcctcttccag
ctcaacggggctctgaaggtggatccgttgccaagcaggggccaggatccctgtggtcac
ctggaaaagccaccccccaagaagcattcccccaagaggaggctgcagcacgctctggag
gatcagatctaccgcatcttccgcaagagccgggtgctgaccaaccagagcatcaactgc
ctgttcaccgtgcccgccaaccaggcttttgtgtacatcgtggctggtgggccccaggac
ggagacgatcccgtggccatgcttctcgaccagctcaggagcaactgcaccatgagagag
actgactcgctgctggctcccaccctgtcgggacccaggaggtatcagatgatgaggcac
ggccggcagcagctctccttccatgcagagagtagcagctccagctcctctgggcagctc
gtggactgcaccctcaaggagttcttgtggcagcacgtggagttggtgctcagcaagaag
ggctttgaagacagcgtggggaggaacccgcagccctctcacttcgagctcccgacctac
cagaagtgggtggctgcagctctaaaactctatgaagtgaccatcgaaggcaaagacgat
gacccaacctgtggcgagctgagctcaaaaatcatgagcagcatcaaagttttggaaggc
tacttagacatagacaccaagttctccgaaaaccgttgccagaaggccctgcccatggcc
cacagcgcctaccagtccaacctgccccacaattacaccatgacagtgcacaagaaccag
ctggcccaggccctgcgtgtgtacagccagcacgcccggggcccagccttccacaaatac
gccatgcagctcaacgaggactgctacaagttctggagcaacgggcaccagctctgcgag
gagcggagcttgacagaccagcactgcgtgcacaagttccatctgctccccaaagcaggg
gaaaagccagaagcagacagaaatcctccaattctgtaccacaacagccgcgctcgttcc
actggtgcctgtaactgtggaaggaaacaagctcctcgggaggacccctttgatatcaaa
gcagctaattatgacttttaccagctgctggaagagaaatgctgtggaaaactggagcac
atcaacttccccatatttcagccaagcacacctgacccagcgcctgctcgggacgaggca
tcgcccgcccctccggaaggcgagattgagaaactcaaagagaaagaacctcagactcag
ggagagagcacaggcctgagcttagccctgagcctgggccagtccacaggcagcctgggc
acttacccacccgatgcccagggtggaggggacaatgcagaaagccacgggcagagcggg
gactccaagagtgagaagaggccgagcctggtggaccgccaggcttccactgtcgagtac
ctccccgggatgctccattccaactgccccaaaggccttctgcccaaattctccagttgg
tcactggtcaagctggggcctgctaaggcttataacttccacacaggcttagatcaacaa
ggctttatcccgggaacaaactatttaatgccttgggacattgtcatcaggacgagaact
gaagatgaaggagacctagacaccaattcctggcctgcacccaacaaggctgttcctggg
aaaagaagcgcggtggtgatgggaagaggccggcggagggacgacatcgctcgggctttt
gtgggctttgaatatgaagatgcacgtgggaggaggttcatgtgctcagggcctgataag
gtgatgaaggtgatgggagggggcccgaaggagtctgccctgaaagccctcaactccgac
atgcccctgtacatcctgtcctcgacgcagggacggggcctcaagccccactacgcccag
ttcatgaggctcttcgtggtggttcccgatgctcctctgcagatcaccctaacgcctcag
gttcaaccaggaccaccaccctgtcctatattttaccctgagaagcaggaaatcaccctt
ccctctgatggactctgggtgctgaggtttccctacgcctacgtgacagaacgggggccc
tgcttccctcccaaagaaagccaacaattaatgagctacaaagttctccgaggaatactg
aaagcaattacacagtaa
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