Anomalospiza imberbis (cuckoo-finch): 137486498
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Entry
137486498 CDS
T11605
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
aib
Anomalospiza imberbis (cuckoo-finch)
Pathway
aib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137486498 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aib03041
]
137486498 (DDX42)
Enzymes [BR:
aib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137486498 (DDX42)
Spliceosome [BR:
aib03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
137486498 (DDX42)
Complex B
137486498 (DDX42)
Complex C
U2 SnRNP specific factors
137486498 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
137486498
NCBI-ProteinID:
XP_068067952
LinkDB
All DBs
Position
22:4655484..4669770
Genome browser
AA seq
1028 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGSAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPESPIAATAAAKGVPGFTSTGSLSSVPT
FPSAGAPGFNNTNASTNSREGGGGGIVRERYNDNRNSRHGEAPRRGEGGGGRGEGGGRGE
GGGGRFNEGQRFNEGQRFNEGQRFSEGQRYDGQRFNDGQRFNDGQRFNDGQRYNDGQRYD
GQRYNDGQRYNDGQRFNDGQRFNDGQRYNDGQRYNDGQRHSEGGGRHSDPSRHSDGRHGD
VHRHSEGRHFTDLPGGNRNNGDSRNSTEGRNSESRNGENRKEANSRDDKTDGFAVPEPPK
RKKSRWDS
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtacaaagagaggctttgggtttggtggctttgcc
ataacacctggcaagaaagaggagcccaagctgtctcagcagtcccacagcgcttttggc
agcgccggctcctcggcagcatttgcgaaatcggggcctcctcagctgccttccttctac
aaaattgggtcaaagagagccaattttgatgaggagaatgcgtactttgaggatgaagag
gaagattccagcaatgtggaattgccctacattcccgcagagaattcccccacccggcag
cagttccattccaaatcggcggactctgacagcgacgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagactcgaagataaagacaaagaa
aaaaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcgtat
tttcgctacatggctgagaaccccactgctggtgtggtgcaagaggaggaagaggataac
ctggagtatgatagtgatgggaatccaattgcaccgtccaaaaaaatcattgatcctctt
ccacctattgaccattcagagattgaatacccaccatttgagaaaaatttctatgatgag
catgaggagatcaccagcctgaccccgcagcaagtggtggagttacggcataagctgaat
ctccgggtttctggggctgctcctccaaggcctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcagattaggaaatctgagtatacccaacccactccaatacaa
tgtcagggtgttccagtggcactaagtggcagagacatgattgggatagccaagactgga
agtgggaaaacagctgccttcatctggccaatgctgatccacatcatggatcagaaggag
cttgagccaggggatggtcccattgcagtgatcgtctgcccgaccagggagctctgccag
cagatccactccgagtgcaagcgctttggcaaggcctataacctgcgctccgtggccgtg
tacggaggagggagcatgtgggagcaagccaaggccctgcaggagggagcagagatcgtg
gtctgcacaccaggtcgtttgattgatcatgtgaaaaagaaggctacaaacctgcagaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatggggtttgaatatcag
gtcagatcaatcgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccaca
ttccgtaagaagattgagaaattggctcgggatattctgatcgacccaattcgggttgtg
caaggagacattggagaggccaatgaagacgtcactcagattgtggagattttcccctct
gggcccagcaagtggaactggctgacgcggcgcctcgtggagttcacgtcctcggggagc
gtcctcctcttcgtcaccaagaaagccaacgcagaggaactggccaataacctcaagcag
gaggatcataacctggggctgcttcatggggacatggaccagagtgagaggaataaagtc
atttcggaatttaagaaaaaggggatccccatcctggtagctactgatgtggcagctcga
gggttggatatcccttccatcaagactgtcatcaactacgacgtggctcgggacatcgac
acccacacgcaccggatcggccgcaccggccgcgcgggggagaagggggtggcctacact
ctgctgacccccaaggacagcaacttcgctggtgacctcgtcagaaacctggagggtgcc
aaccagcacgtctccaaagagctgctggatttggcaatgcagaatccatggttccggaaa
tcccgttttaaaggagggaagggcaagaagctgaatattggtggaggtggcttgggatac
cgtgaacgccctgggctgggctcagaaaatactgaccgtggaaacaacaacagtgtgatg
agcaactatgaggcctacaaaccatccaccggggccatgggggacaggctgacagcaatg
aaagcagctttccagtcccagtacaagagtcactttgttgctgcaagtttaaataaccaa
aagactgggagctccgctgctggtgccagcggctggaccagtgccgggagcctcaactcc
gtcccgacgagttcagcgcagcaaaacgctgccaatcccgagagccccatcgcagccacc
gcggcagcgaagggagtcccgggcttcaccagcacgggcagtctgagcagcgtgcccacc
ttcccgagcgccggagcaccgggcttcaacaacaccaacgccagcaccaacagccgagag
ggcggcggtggcggcattgtcagagaacggtacaacgacaaccggaacagtcggcacggc
gaggccccgcggcgaggggagggcggcggtggccgaggggagggcggtggccgaggggag
ggcggcggtggccgctttaacgagggccagcgctttaacgagggccagcgctttaacgag
ggccagcgtttcagtgagggccaacgctacgatgggcagcgctttaacgatgggcagcgc
tttaacgatgggcagcgctttaacgatggccaacgttacaacgatggccaacgttacgat
ggccaacgttacaacgatggccagcgctacaacgatggccagcgctttaatgatgggcaa
cgctttaacgatggccaacgttacaacgacggccagcgctacaacgatggccaacgccac
agcgaaggcggtggccggcacagtgacccctcccggcacagcgacggccgccacggcgac
gtccatcgccacagcgagggccggcacttcaccgacttgccgggcggcaaccgcaacaac
ggtgacagcaggaacagcaccgaggggaggaacagcgagagcaggaatggagagaacagg
aaggaggccaacagccgagatgacaagacagatggttttgctgtcccagagcccccaaaa
cggaagaagagccggtgggacagttaa
DBGET
integrated database retrieval system
