Aequorivita iocasae: JK629_01165
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Entry
JK629_01165 CDS
T07991
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aic
Aequorivita iocasae
Pathway
aic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JK629_01165 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aic03021
]
JK629_01165 (rho)
03019 Messenger RNA biogenesis [BR:
aic03019
]
JK629_01165 (rho)
Transcription machinery [BR:
aic03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JK629_01165 (rho)
Messenger RNA biogenesis [BR:
aic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JK629_01165 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
QQX76913
UniProt:
A0ABX7DTN6
LinkDB
All DBs
Position
236400..238100
Genome browser
AA seq
566 aa
AA seq
DB search
MFEISDLKSKKLPELQEIAKELNVPKYRTQKKLDLVYQILDYQAANPKAVKAVIKAEESS
PDTKKEEKTSSSSDNAAKDQKQRPQKNENRNKKPQPQKKHHDKKSDDDKKPADDKRSGND
RNEKDRKDKKESDKKPQHQKSSSNDNRQKNQRNDNNNSDNRQKHQSHKQKDGNVHDNRNN
GNKDSRNRYREPDYEFDGIIESEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLF
GLKTGDTVLGEVRPPKEGEKYFPLIKVNKINGLNPNVVRDRVSFEHLTPLFPQEKFNLAD
KQSTISTRIIDLFAPIGKGQRGMIVSQPKTGKTMLLKDIANAIAANHPEVYQIILLIDER
PEEVTDMQRNVRGEVVASTFDKEASEHVRVANIVIDKAKRLVECGHDVVILLDSITRLAR
AYNTVQPASGKILSGGVDANALHKPKRFFGAARNIENGGSLSIIATALTETGSKMDEVIF
EEFKGTGNMELQLDRKISNRRIFPAIDLTSSSTRRDDLLLDENTIQRMWVLRKYLADMNP
VEAMEFINDRVKQTRNNEEFLISMNG
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcagatttaaaaagcaaaaagctacctgaactccaggaaatagccaaa
gaacttaatgtgccgaaatatcgcacccaaaaaaaattggacttggtctatcaaattctc
gattatcaagctgctaacccaaaagcggttaaagcagtcattaaagccgaagagtcttct
ccagatactaagaaggaggaaaaaacttcttcttcaagtgacaatgcggccaaggaccaa
aaacaacgtcctcagaaaaatgagaataggaacaaaaaacctcagcctcaaaaaaagcat
cacgataaaaaaagtgatgacgacaaaaaacctgcagacgataagcgttccggcaatgac
agaaatgaaaaagacaggaaggacaaaaaggaaagcgataaaaaaccgcagcaccaaaag
tcaagcagcaacgacaaccgtcagaaaaaccaacgtaacgacaataacaactcagacaat
cgccaaaagcaccaaagccacaaacaaaaagatggtaacgtgcatgacaatcgaaataac
ggaaataaagactcccgcaaccgttatcgcgaaccggattatgaatttgacggcattatt
gaaagcgaaggcgtgttggatattatgcaggatggctacggctttttgcgttccagcgac
tacaactacctttcatcgcccgatgatatttatgtatcgcaatcgcagattcgtcttttc
ggattaaagactggagatacagttctgggagaggtgcgcccgccaaaagaaggtgaaaaa
tatttccctttaattaaggtgaacaaaataaatggtctgaacccgaacgtggttcgcgac
cgtgtatcatttgagcatttaacgccgcttttccctcaggaaaaattcaaccttgcagac
aagcaaagtaccatttcaacacgaattattgatctttttgcacctatcggaaaagggcag
cgaggcatgattgtttcgcaaccaaaaacgggtaaaaccatgctgttgaaagatattgca
aacgcaatagcagcaaaccacccagaagtctatcaaattattcttctgattgatgagcgc
cctgaagaagttaccgatatgcaacgaaatgtacgtggtgaagtggttgcttcaaccttc
gacaaagaggccagtgagcacgttcgtgtggcaaacattgtaattgacaaagcaaagcgt
ttggtagaatgtggccacgatgtggtaattcttttggattccattacacgtttggcgcga
gcttacaacacagttcagcctgcaagtggtaaaatattgagtggtggtgtagatgcaaac
gcgcttcacaaaccaaaacgtttctttggtgccgcccgtaatattgaaaatggtggctct
ctaagtatcattgcaaccgctttgactgaaacgggttctaaaatggacgaggtgattttt
gaggaatttaaaggaaccggtaacatggaacttcagttggatagaaaaatctccaaccga
agaattttccctgctattgaccttacctcttcaagcacgcgacgtgacgatttactgctt
gatgaaaacaccattcaaagaatgtgggtattgcgcaaataccttgcggatatgaaccca
gtggaagcaatggaattcatcaacgaccgagttaaacagacacgaaacaacgaagaattt
ttgatttcgatgaacggataa
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