Aequorivita iocasae: JK629_06840
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Entry
JK629_06840 CDS
T07991
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
aic
Aequorivita iocasae
Brite
KEGG Orthology (KO) [BR:
aic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aic03032
]
JK629_06840 (topA)
03400 DNA repair and recombination proteins [BR:
aic03400
]
JK629_06840 (topA)
Enzymes [BR:
aic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JK629_06840 (topA)
DNA replication proteins [BR:
aic03032
]
Prokaryotic type
DNA Topoisomerases
JK629_06840 (topA)
DNA repair and recombination proteins [BR:
aic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JK629_06840 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
DUF3095
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QQX77970
LinkDB
All DBs
Position
1481877..1484393
Genome browser
AA seq
838 aa
AA seq
DB search
MAKNLVIVESPAKARTIEKFLGKDFKVSSSFGHIADLPSKELGVDVEGDFTPKYIVSSDK
KKLVTELRALSKKADMVWLASDEDREGEAIAWHLAEELKLDKNKTKRIVFHEITKSAILK
AIENPRQIDYNLVNAQQARRVLDRLVGYELSPVLWKKVKGGLSAGRVQSVAVRLIVERER
EIEAFTPVGSYRIDAEFTTADGSKFKAKLPKNFDTEEEAREFLRKNLGAEYKISDLTKKP
ASKSPAAPFTTSTLQQEAARKLYFSVGKTMTIAQRLYEAGLITYMRTDSVNLSNDAKNAA
QKEIVSSYGKEYSKPRDYKGKSKGAQEAHEAIRPTDMSQHTISGDYDQARLYDLIWKRTL
ASQMSDAQLERTNVKIDVLSKEKVSENFTANGEMIKFDGFLKVYLEGTDFEEEEQEGMLP
NMKKGDSLENNYITATERFTRPPYRYTEASLVKQLEELGIGRPSTYAPTISTIISRNYVE
KGTVEGVERKYLQLTLQKENIKDKTLTETVGSDKGKLVPTDIGMIVNDFLVDHFENILDY
NFTAKVEQDFDDIAEGKEEWTKMMKDFYGKFHPRVEHVEENADRESGERILGEDPETGKT
VLVRLGKYGPMAQIGAPDDEEKKFASLRPDQQLHLVTFEEVMDLFKLPKTLGIYEKEEVE
VNNGRFGPYVRFGKTFISLPKGMDPLDVDMAFAKELIEEKKKADAPIYMYEDLPVQKGVG
RFGPFIKWNNMFINVNKKYDFDNLSDEDIEQLIEDKKQKEIDKLINEWPEEKIRIEKARW
GRFNLIKGKTKVELPKGTEADKITLEEAKDLLARKSPKKKSTTKKKTATKKKTTAKKK
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaatttagtgatcgttgagtccccagcaaaagcaagaaccattgaaaaattt
cttgggaaagatttcaaggtttcctccagttttgggcacattgcagatcttccgtccaag
gaattgggcgtggacgtggaaggggatttcacacctaaatatatagtgagtagtgacaaa
aagaagttggttactgaattaagggcactctccaaaaaagccgatatggtctggctggca
agtgatgaggaccgcgaaggagaagccattgcgtggcatttggccgaagaattgaagctg
gacaaaaacaaaaccaaacgtattgtttttcacgaaattactaaatctgccattttaaaa
gccattgaaaatccgcgccaaattgattataatttggtaaacgcacagcaggcgcgccgc
gtgctcgaccgtctggtggggtatgaactttcgcccgttctttggaaaaaggtaaagggc
ggactttctgcaggccgtgtgcaatctgttgcagtaagactgattgtggagcgcgaaaga
gaaattgaagctttcactccggtggggtcctatagaattgatgctgaatttactactgct
gacggtagtaaattcaaggcaaaacttcccaagaattttgatacagaagaagaagcccgt
gagttccttcggaagaatctgggtgccgagtataaaatttcagatttaacaaaaaaacct
gccagcaaaagtcctgcggcgccttttaccacctccactttgcaacaggaagccgcgcga
aaactctatttttcagtaggaaagacgatgaccatagcccaaaggctctacgaagctggg
cttataacctatatgcgtaccgacagcgtcaaccttagcaacgatgcaaaaaacgcagca
caaaaagaaatagtttcttcatacggaaaagaatacagcaaaccccgggattacaaaggt
aagagcaagggcgcgcaggaagcacacgaggccatacggccaaccgatatgagccagcac
accatttctggcgattatgaccaagctcgtttatacgatttaatttggaaacgcacactg
gcttcgcaaatgagcgatgcacaattggagcgaaccaatgtgaagattgatgtgctttcc
aaagaaaaagtttcagaaaactttactgcaaatggtgaaatgataaagtttgacggtttc
ttaaaagtgtatttggaaggaaccgattttgaggaagaagagcaggaaggcatgctgcca
aatatgaaaaagggcgattcactcgaaaataattacatcaccgcgacggaaaggtttact
cgtccaccgtatcgctacacggaggcttctttagtgaaacaattggaagaactcggcatt
ggccggccttcaacctatgcgcctaccatttccacaattatcagcagaaattatgttgaa
aaaggaactgtagaaggggtagagcgaaaatatcttcagcttacacttcaaaaagaaaac
ataaaagacaaaacattaaccgaaactgttggcagtgacaaaggaaaattggttcccact
gatatcgggatgatcgtgaacgactttttggttgatcattttgaaaatattctcgattat
aatttcactgcaaaagtagagcaggattttgacgacatcgcagagggcaaagaggagtgg
acgaagatgatgaaagatttctacggaaaatttcacccaagggttgaacacgttgaagaa
aacgcagaccgcgaaagtggtgagcgtattcttggcgaagaccccgaaactggaaaaacc
gttttggttcgcctcggaaaatatggcccgatggcgcagattggcgcacctgatgatgag
gaaaagaaattcgcaagccttcgtcccgaccagcaattgcacttggttacttttgaggaa
gtaatggatttgtttaagctcccgaagactttaggcatttatgaaaaagaagaagttgag
gtgaataacggccgctttgggccgtacgtgcgtttcggtaaaacctttatttcgcttccg
aagggaatggacccactggatgtggatatggcctttgcaaaagagttgattgaagaaaag
aaaaaggccgacgcacctatatatatgtatgaggatttgccagttcaaaaaggagtgggg
cgttttggtccttttataaaatggaacaatatgttcataaacgtgaacaaaaaatacgat
tttgacaatctttccgacgaagatattgaacagcttatcgaagataaaaaacaaaaagaa
atcgataaattgataaacgaatggccggaagaaaaaatacgaattgaaaaagcacgttgg
gggcgtttcaatttaataaaaggaaaaacaaaggtagaattacccaaaggtaccgaagct
gacaaaataactttagaagaagcgaaagacctgctggcaaggaaaagcccaaaaaagaaa
tctaccacaaaaaagaaaaccgcaactaagaaaaaaaccacggccaagaaaaaataa
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