Aequorivita iocasae: JK629_09020
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Entry
JK629_09020 CDS
T07991
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aic
Aequorivita iocasae
Pathway
aic03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JK629_09020 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aic03400
]
JK629_09020 (ligD)
Enzymes [BR:
aic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JK629_09020 (ligD)
DNA repair and recombination proteins [BR:
aic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JK629_09020 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
GBS104-like_Ig
DNA_ligase_OB_2
GH3
Motif
Other DBs
NCBI-ProteinID:
QQX75491
LinkDB
All DBs
Position
1946698..1949115
Genome browser
AA seq
805 aa
AA seq
DB search
MALQDYIKKRKFNKTPEPEGELDDNNAYRFVIQRHKASHLHYDLRLEMEGVLKSWAVPKG
PSMNPSDKRLAIMTEDHPVKYLTFHGVIPKGNYGAGVMDIWDEGTYQVLEDEDPVKQLKN
GDLKIEFYGKKIKGAFALVKMKRDTEKNQWLLIKKKDAFSTDLHYDAEIFASKKKVAKPG
KLKPLNTKTYIEPMLASTGKKIFKDPDWVFELKWDGYRVLANIQDGHVELYSRNGISYNK
KFASIKKELENVSNDCILDGEVVLVNKKGNSDFQKLQNYDAGTSGDQLKYYVFDLLHLNG
HDTLGLSLLERKSLLPEILKDLDNVVYCDHIKAMGPTLYKRAIDAGMEGVIAKKADSTYT
PGYRTSNWLKIKSTNTEEAIICGYTDSVTGGALFGSLILGMFHGKKLIYVGNCGTGYSNA
EQKEILEKLKAIETDTNPFEKKITLKGRNPHWVTPQLICEVKFSEWTKNGIMRHPVYKGL
RKDKDLEEIRPQSKKTSTSTPASASSLEIDGISVPVTNLEKVYWPASGYTKYDLIDYYLN
ISETILPYLKDRPQNLHRHPNGIQKKGFYQKDNESLPDWVESIKIYSESSKKEIDYLLCQ
NEATLLYMANLGCIEINPWNSTIKNLDKPTYTVIDIDPSDKNNFEQVIEVALAAKEVLDL
AKIKGLCKTSGSSGMHIYIPLGEKYNYEQARDFTKLLCYYIHEKLPKLTSMERVVKLRKN
KIYLDFLQNRRGQTLAAPYCVRPKPGGTVSAPLLWKEVKPGLDLSSFTLKNMPQRISQKG
DLFKAVLEKGIDMKKTIEILNSHEG
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
gtggcactgcaggattacataaaaaaacgaaaattcaacaaaacaccagaaccagaaggc
gaactggatgataataatgcttatcgctttgtgatccaaaggcacaaggctagccatttg
cattacgatctacgtcttgaaatggaaggcgtactaaaaagttgggcagtaccaaaaggt
ccttccatgaatccctcagataaacgattggccattatgaccgaagatcatcctgtaaaa
tacctcacgttccacggcgtaattccaaaaggaaattatggcgctggggtgatggacatt
tgggacgagggtacctatcaagttctggaggatgaagatccagttaaacaattaaaaaat
ggcgaccttaaaattgaattctacggaaaaaaaataaaaggagctttcgctctagtgaaa
atgaaaagggatactgaaaagaaccaatggttactgatcaaaaaaaaggatgccttttca
acagatctacattatgatgccgagattttcgcatcaaaaaaaaaagtagctaaacccgga
aaattaaaacccctaaataccaaaacctatattgaaccaatgctggccagcacgggaaaa
aaaatatttaaggaccccgattgggtttttgagttgaaatgggacggctaccgtgtgttg
gccaatattcaggatggccatgtggagctatattcccgcaatggcatttcctacaataaa
aaatttgcttccattaaaaaggaattggaaaatgtgtctaacgattgtatcctcgatggg
gaagtggtacttgtaaataaaaaaggaaactccgattttcaaaaacttcaaaattacgat
gcgggcacttctggagatcaattgaaatattatgtgttcgacttgctccacctaaacggc
cacgatactttggggcttagtctgctggaacgcaaaagcctcttgccagaaatattgaag
gacttagataacgtagtttattgtgaccatatcaaggcaatgggccccacactctacaaa
cgcgcaatagatgcagggatggaaggggtaattgcgaaaaaagccgattcaacttatact
cctggctaccgaacttcaaattggctaaaaattaaaagtaccaataccgaagaagctatt
atttgtggctataccgattctgttactggcggagctctttttggttcgcttattttggga
atgttccatgggaagaaacttatctatgtgggcaattgcggtaccggctattccaatgcg
gaacaaaaagaaatattagagaagcttaaggccattgaaacggataccaatccttttgaa
aaaaaaattaccttaaagggaagaaacccccactgggtaacgccacaattaatctgtgag
gtgaaattctccgaatggacaaaaaacggaataatgcggcaccctgtatataaagggttg
cggaaggataaggatttggaggaaataaggccacagtcaaaaaagacttccacaagtact
cctgccagcgcttcctcactggagatagatggtatatctgtgcctgttacgaatctagaa
aaagtgtattggcccgcatcaggatataccaaatatgatttgattgactattatttaaat
atttctgaaaccattttgccatatttaaaggatcgtccacaaaaccttcaccgtcatcct
aacggtattcaaaaaaaaggtttttaccaaaaagacaacgagtcattgcccgactgggtg
gaatcaattaaaatttattccgaatcttccaaaaaagagattgactatctgctttgccaa
aatgaggccactttactttatatggcaaatctaggctgcatcgaaattaatccgtggaat
tccacaattaagaatttagataaacccacctatacggtaatagacattgatccttctgat
aaaaataattttgaacaggtaatagaagttgcattagcagctaaagaagtattggatttg
gcgaaaattaaggggttgtgcaaaacttctggatccagtggcatgcatatctatattcca
ttgggagaaaaatataattatgagcaagcgcgtgacttcaccaaattattgtgctattac
atccacgaaaaattaccaaaactcaccagtatggagcgtgtggtgaagcttagaaaaaat
aaaatatatctagattttttacaaaacagacggggtcaaaccttggcagctccctattgt
gtacgaccaaagcccgggggtactgtttccgcacccctattgtggaaggaggtaaaacca
ggtttggatctttccagttttactcttaagaatatgccgcaacgaatctcccaaaagggt
gatttatttaaagctgtattagaaaagggaattgatatgaaaaagacgattgaaatttta
aattctcatgagggttga
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