Aequorivita iocasae: JK629_10390
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Entry
JK629_10390 CDS
T07991
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aic
Aequorivita iocasae
Pathway
aic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JK629_10390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aic03019
]
JK629_10390
03009 Ribosome biogenesis [BR:
aic03009
]
JK629_10390
Enzymes [BR:
aic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JK629_10390
Messenger RNA biogenesis [BR:
aic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JK629_10390
Ribosome biogenesis [BR:
aic03009
]
Prokaryotic type
rRNA helicases
JK629_10390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QQX75741
LinkDB
All DBs
Position
2257587..2259401
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AA seq
604 aa
AA seq
DB search
MTAFKALGLEENLLKAIADMGFETPSEVQAKAIPILLERETDMVSLAQTGTGKTAAFGFP
MLQKIDVNSRTTQGLILSPTRELCLQITNEMIAYGKYLPGLNVTAIYGGASITDQARQIK
KGSQIIVATPGRMKDMIGRGLVDISKIEYCVLDEADEMLNMGFYEDITEILSHSPKDKST
WLFSATMPKEVSTIAKKFMHTPVEITVGTKNVGSDQVSHEYYLVNARDRYNALKRLADAN
PDIFSVVFCRTKRDTQKVAEQLIEDGYNAAAIHGDLSQNQRDLVMKSFRNRQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKTGVSIVIVSKSEVRKIKSIEKI
IQKQFVAKEIPSGMEICEVQMFHLANSIKDTEINPEINSYLPNINEVLADFSKEELIKKV
FSVEFTRFLNYYKNSKDLNISGERNFSDEDAKDSTRYFINIGNKDDFDWMSLKDFLRDLL
QLGKDDVYKVDVKDSFSFFNTDTTHQELVMGIFKDFKLDGRQINIEISKDTGRSKGRSGG
GGRDRGRRRGDRNDRGDGGGRKGGFKKRSGGFDGGDKPKFKGKSRRGAPRPEAKGTGGRR
RRKG
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgacagcatttaaagcactcggcttggaagaaaatcttctaaaagccatcgccgacatg
ggttttgaaaccccttcggaagtacaagcaaaagcaatcccaatccttttagagcgtgaa
accgacatggtttccctggcccagacaggaacgggaaaaaccgcagcatttggttttcca
atgttgcaaaaaattgacgtgaacagccgcaccacacaagggcttattctttcgccaacg
cgcgaactttgtcttcagattacaaatgaaatgatagcttacggcaagtatttgccaggg
ctaaacgttaccgccatttatggtggtgcaagtattacggaccaagcccgccagattaaa
aaaggttctcagattattgttgcaacccctggtagaatgaaagatatgattggtcggggt
cttgtagatatttcaaaaattgaatactgcgtgctcgatgaggcagatgaaatgctcaac
atgggcttttacgaagacatcacggaaattctttcacattcaccaaaagacaaaagcact
tggctttttagcgcaacgatgcccaaagaggtatccaccatcgccaaaaagtttatgcac
acgcctgtggaaattaccgtagggacaaaaaacgtggggtctgaccaagtttcacatgaa
tattatttggtaaatgcacgcgatcgttacaatgccttaaagcgtttggcagatgcaaac
cccgatattttttcggtagttttttgccgaacaaaacgcgacacccaaaaagtggcggaa
caattaattgaagatggctacaatgcagctgcaatacacggagatttaagtcagaaccaa
cgcgacttggtaatgaaatctttcagaaaccgtcaaatccaaatgcttgtagcaaccgat
gttgctgcccgtggtattgacgttgatgatattacacacgtaataaattaccaacttcca
gatgaaatagaaacctacacccaccgaagcggccgtacgggtcgtgccggtaaaacaggt
gtttccatcgttattgtttcaaaaagtgaagttcgaaaaataaaaagcatcgaaaaaatt
atccagaaacaattcgttgcaaaggaaataccttcaggtatggaaatctgcgaagtgcaa
atgtttcatttggccaatagcatcaaggataccgagattaaccctgaaataaattcatac
cttccaaatatcaacgaggtattggcagatttttcgaaggaagaacttattaaaaaagta
ttctccgtagagtttacacgtttcttgaattactataaaaacagtaaggacctaaacatt
tccggagagcgcaacttttctgacgaagatgcaaaagacagtacgcggtatttcataaat
atcggtaacaaagatgattttgattggatgagccttaaggatttccttcgcgatttgtta
caacttgggaaagacgatgtttacaaagttgacgtaaaagatagtttctcctttttcaac
acagatactacccaccaagaattggtgatgggtatttttaaggattttaaacttgacgga
agacagatcaacattgaaatatccaaagatacaggacgcagcaaaggtagaagtggtggc
ggcggacgcgatcgcggtagaagaagaggtgatagaaatgatcgtggcgacggcggcgga
agaaaaggcggttttaaaaaacgtagtggcggttttgatggaggtgacaagccaaaattc
aaaggcaagagccgaaggggtgcaccgcgtccagaagcaaagggcacgggcggaagacgc
cgaagaaaaggataa
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