Aequorivita iocasae: JK629_11360
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Entry
JK629_11360 CDS
T07991
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
aic
Aequorivita iocasae
Pathway
aic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JK629_11360 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aic03400
]
JK629_11360 (uvrA)
DNA repair and recombination proteins [BR:
aic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JK629_11360 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JK629_11360 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
RsgA_GTPase
DnaJ_CXXCXGXG
nSTAND1
nSTAND3
MeaB
AAA_25
cobW
Viral_helicase1
NMDAR2_C
AAA_21
PRK
Motif
Other DBs
NCBI-ProteinID:
QQX75926
LinkDB
All DBs
Position
complement(2454154..2456985)
Genome browser
AA seq
943 aa
AA seq
DB search
MSKNEDFIEVLGARVHNLKNIDVRIPREKLVVITGLSGSGKSSLAFDTIYAEGQRRYIET
FSAYARQFLGSLERPDVDKIEGLSPVIAIEQKTTSKSPRSTVGTITEIYDFLRLFYARAS
DAYSYNTGEKMVSYSDAQIKQLILEDFTDKKVSILAPIIRSRKGHYRELFEQIAKQGFLK
VRVDGEVRDIVKGMKVDRYKTHDIEIVIDRLKVSGESDNDKRLSETINTAMYHGDDVLMV
LDNDTNEARYFSRSLMCPSSGISYPNPEPNNFSFNSPKGMCPNCKGLGKLYEVNLNKLVP
NPKLSIKQGALAAHGPQKNNWVFKQLELIAERFKFKLSDPFESIPQEAKDVIFFGGNEKF
DVASKELGITRSYKIDFEGVATFIQNTFDANETTSLKRWAKEYMDKIACPECNGTRLRKE
SLYFKVNEKNIAELANMDVVELAEWFANLEKNLSETQLKIASEIIKEVRSRLQFLVDVGL
TYLALDRSSKSLSGGEAQRIRLATQIGSQLVGVLYILDEPSIGLHQRDNERLIYSLKQLK
DIGNSVIVVEHDKDMIESADYVIDIGPAAGRHGGEIVSQGTPEEIEKHNTLTADYLNGKK
EIEIPKKRRKGNGKKLILKGATGNNLKNITVEFPLGKMIGITGVSGSGKSTLINETLYPI
LNAHFFNGVKKPMPYKKIEGLENIDKVIDINQSPIGRTPRSNPATYTGVFSEIRNLFAKT
PEAMIRGYKPGRFSFNVAGGRCETCKGAGLRVIEMNFLPDVYVECETCQGKRFNRETLEI
RYKGKSIYDVLEMTINEADGFFENIPKIHRKIKTIKDVGLGYITLGQQSTTLSGGEAQRI
KLATELSKRDTGNTFYILDEPTTGLHFEDIRVLMVVLNKLVGKGNTVLIIEHNLDVIKTV
DYIIDIGPEGGKQGGKVMALGTPEEVAKDKKSYTAQFLKKELH
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaatgaggattttattgaagttttgggcgcccgcgtccacaatttaaagaac
attgacgttcgaattccaagagaaaagttagttgtaattacgggactttccggcagcgga
aaatcatctttggcttttgataccatttatgccgaaggccagcgccgttatatagaaaca
ttttctgcctacgcccgtcaatttttaggaagtttagaaagacctgatgtagataaaatt
gaaggcctttccccggtaattgccattgagcaaaaaaccacgagtaaaagcccacgttcc
acagtaggcaccattactgaaatttatgatttcctccgtctgttttacgcgcgcgcaagt
gatgcatacagctacaacaccggtgaaaaaatggtcagctacagtgatgcacaaataaaa
caacttatactcgaagattttaccgataaaaaggtaagcattttggctcccataatccgt
tcccgtaaagggcattaccgtgagctttttgagcagatcgccaaacaaggttttctaaaa
gtacgcgtggacggcgaagtgcgcgatattgtaaagggtatgaaggttgaccgttacaaa
acccatgatattgaaatagtaattgatcgcttaaaggtttccggagaaagtgataatgac
aaacgcctctccgaaaccattaataccgcgatgtaccacggcgatgatgtactgatggtt
ttggacaatgacaccaacgaagcccgctatttcagccgttcattgatgtgtccgtcttca
ggaatttcctatcctaatcccgagccgaacaatttttccttcaattccccaaaaggaatg
tgccccaattgcaaagggctggggaagctttatgaggtgaaccttaacaagttggtgcca
aatcccaaactatccataaagcaaggtgctttggctgcacatggcccccaaaagaacaat
tgggtttttaagcaacttgaactgattgcggaacgtttcaaatttaaattgagcgatccg
tttgaaagtattcctcaagaggctaaagatgttatatttttcggtggaaatgaaaagttt
gatgttgcttcaaaagagcttggtattacccgcagttataaaatagactttgaaggggtt
gcaacttttatccaaaatacttttgacgcaaacgaaaccacttcacttaaacgttgggca
aaggaatatatggacaaaatcgcctgtccggaatgcaacggaacccgactccgaaaagaa
tctctttatttcaaggtaaacgaaaagaatattgccgaactcgccaatatggacgtagtt
gaacttgcggaatggtttgcaaatctggaaaaaaacctttcggaaacgcagcttaaaatc
gcgtcggaaattataaaggaagtacgctctaggcttcagtttttggttgatgtgggcttg
acctatttggctttggaccgcagttcaaaatcgctttcagggggcgaggcgcaacgaatc
cgtttggcaacgcaaataggctcgcaattggtgggggtgctctatattttggatgagccc
agtattggccttcaccagcgcgataacgaacgactgatctattcattaaagcaattaaaa
gatattggcaattccgttattgttgtggagcacgacaaagatatgattgaaagtgccgat
tatgtgatagacattggcccagcagcgggaaggcacggcggcgaaatagtatcgcaaggc
acgcccgaggaaatagaaaaacacaataccctaacggcagattatttaaacggaaaaaaa
gaaattgaaatacctaaaaaacgccgaaaaggaaacggaaagaaactgattttaaaaggt
gcaacaggcaacaatcttaaaaacattaccgttgaatttccattgggaaaaatgattgga
ataacgggcgtttccggcagtggaaagagtacgctcatcaacgagaccctctaccctatt
ctaaacgcacattttttcaacggggtaaaaaaaccgatgccttataaaaaaattgaaggg
ctcgaaaatattgataaggttatcgatataaaccaatcaccgattggcaggacgccacga
agcaatccagctacttacacaggcgttttttctgaaatacgcaatctgtttgcaaaaact
cccgaagcaatgattcgtggttataaacccggacgtttcagttttaacgttgcagggggg
cgttgcgagacctgcaaaggtgctggtttacgcgttattgaaatgaattttctacccgat
gtttacgtggaatgtgaaacttgccagggcaaacgtttcaaccgcgaaacgttggaaatt
cgctacaaaggaaaatccatttatgacgtcttggaaatgacaattaacgaagctgatggt
ttctttgaaaatattccgaaaatccatcgaaaaataaaaaccataaaggatgttggtttg
ggatatataaccttgggacaacaatctaccacgctttcgggaggagaagcacaacgaatt
aaattggcaactgaactttccaaacgcgacacgggaaatacgttctatattttagatgaa
cccacaaccgggcttcattttgaggacattcgtgttttgatggttgtgttgaataaatta
gttggcaaaggaaataccgttttgataattgagcacaatctagacgtaatcaaaaccgtt
gactatattattgatataggccctgaaggcggaaaacaaggtggaaaggtaatggccttg
ggaacccccgaagaagttgcaaaggacaaaaaaagctataccgcacaatttcttaaaaaa
gaattacattga
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