Aequorivita iocasae: JK629_12105
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Entry
JK629_12105 CDS
T07991
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
aic
Aequorivita iocasae
Brite
KEGG Orthology (KO) [BR:
aic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aic03009
]
JK629_12105 (rlmD)
Enzymes [BR:
aic01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
JK629_12105 (rlmD)
Ribosome biogenesis [BR:
aic03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
JK629_12105 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
MTS
Methyltransf_15
Cons_hypoth95
PrmA
Methyltransf_11
FtsJ
TRAM
PCMT
RrnaAD
Methyltransf_2
UPF0020
N6_N4_Mtase
Methyltransf_12
Methyltrans_SAM
Ig_TMEM131L_2nd
Methyltransf_4
DUF5590
Motif
Other DBs
NCBI-ProteinID:
QQX76068
LinkDB
All DBs
Position
complement(2634137..2635552)
Genome browser
AA seq
471 aa
AA seq
DB search
MGRRNNRVLFENIEVIDAGAKGKAVAKAPDGKVVFIDNAVPGDTVIVQTHKKRKAYYEGS
AITITKYSEKRVEPVCPHFGTCGGCKWQNMGYEHQLFFKQKEIEQNLKRIGKVELPEIKP
ILGSENQYFYRNKMEFSFSDNKWLTLEQIKSDKVIENRNALGFHIPGMWDKILDLDICYL
QADPSNAIRDFIKAKAEKLNLSFFNTRNQEGFLRTLMIRTSSTGEIMVLVQFFHEDEENR
NLLLSAVAKEFPQITSLLYVINSKGNDTLYDQDIKLFSGRDHIFEEMEGLKFKINAKSFY
QTNSEQAYELYKITRNFAELSGKELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPDAIEAA
KENAQLNNIQNVEFYVGDMKKVFNEEFINTHGKPDVVITDPPRDGMHADVVSQLLNLGAP
KIVYVSCNSATQARDLALLDSNYKVLKVQPVDMFPQTHHVENVVLLKKRES
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgggaagacgaaacaacagagtactttttgaaaatattgaggtaattgatgcgggagca
aaaggaaaagccgtggcaaaggccccggatggaaaagtagtttttattgacaacgctgta
cccggcgataccgttattgtacagacccataaaaagcgaaaagcatattatgaaggctct
gcaattacgattacaaaatattccgagaaaagagtcgagcctgtttgtccacatttcgga
acctgcgggggttgcaaatggcaaaatatgggctatgagcaccaacttttttttaagcaa
aaagaaattgaacaaaatttaaagcgtatcggcaaagtagaattaccggaaattaaacct
attctgggttccgaaaatcaatatttctatcgcaacaagatggagttttcctttagcgat
aacaaatggctgactttggaacagattaaaagcgataaagttattgaaaaccgaaatgct
ttgggatttcatattcctggaatgtgggataagattctggatctcgatatctgttatctc
caagccgatccaagtaacgccatccgcgattttataaaagccaaagccgaaaaattaaat
ctttctttttttaacactcgaaatcaggaaggttttttaagaacactgatgatacgtact
tcttcgacgggcgaaataatggttttggtccagttctttcacgaagatgaagaaaacaga
aatttacttttaagcgctgttgcaaaagaatttccacagattacttccctgttatatgta
atcaattcaaaagggaatgatacgctatatgatcaagatattaaacttttctccggaaga
gaccatatttttgaggaaatggaaggtttgaaatttaaaataaacgccaaatccttttac
caaacgaacagcgaacaagcctacgagctttataaaataacccgtaattttgccgagtta
agtggtaaggaactggtttacgatctttatacgggaacgggaacaattgctcaattcgtc
gccaaaaaagccaaaaaggtgattggtgttgaggcagtccccgatgctattgaagctgcc
aaagaaaacgcgcaattaaacaatattcaaaacgttgaattctacgtgggcgacatgaaa
aaagtttttaatgaggaatttatcaatacccacgggaaaccggatgttgttatcaccgat
ccgccccgcgacgggatgcatgctgatgtggtttcgcaattactgaacttgggcgctcct
aaaattgtttacgtaagttgcaatagcgcaacccaagcgcgtgatttggcgcttttggat
tcaaattataaggttttgaaagtacagcctgtagatatgtttccacagacccatcacgta
gaaaatgttgtacttttgaaaaaacgagaatcataa
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