Acinetobacter indicus: CTZ23_13875
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Entry
CTZ23_13875 CDS
T05342
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aid
Acinetobacter indicus
Pathway
aid03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aid00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CTZ23_13875 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aid03021
]
CTZ23_13875 (rpoC)
03400 DNA repair and recombination proteins [BR:
aid03400
]
CTZ23_13875 (rpoC)
Enzymes [BR:
aid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CTZ23_13875 (rpoC)
Transcription machinery [BR:
aid03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CTZ23_13875 (rpoC)
DNA repair and recombination proteins [BR:
aid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CTZ23_13875 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AVH15259
LinkDB
All DBs
Position
complement(2856742..2860932)
Genome browser
AA seq
1396 aa
AA seq
DB search
MKDLLDIMRKKTDSDGHAPVEFDRIRIGLASPEMIKSWSHGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECLCGKYKRMKYKGVICEKCGVEVTTAKVRRERMGHIELASPVAHIW
FLKSLPSRIGLLLDMTLRDIERVLYFESYVVTDPGMTPFEKYQLLNDEEYFNALEEHGDE
FTAKMGAEAVQDLLKDIDLENEISRLREEIPQTTSETKLKKASKRLKLMEAFKESNNKPE
WMVMNVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE
KRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI
TVGPTLRLHQCGLPKKMALELFKPFIFAKLQASGQATTIKAAKKMVERETPEVWDVLASV
IRQHPVMLNRAPTLHRLGLQAFEPILIEGKAIRLHPLVCAAFNADFDGDQMAVHVPLTLE
AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYITRDAVNAKGEGMVFADTHEVNR
ALATGQVDLHARVKARVYQTVINDNGEREQQTIVVDTTPGRCLLWEVVPEGLSFEQINVE
MTKKNISKLINSCYRKLGLKDTVIFADQLMYLGFRQATRSGVSVGMEDMVIPPSKQAIID
KAEAEVREIEQQFEQGFVTAGERYNKVVDIWARTNDQVAKAMMDNLSFTTVKNKQGEDEK
QKSFNSIYMMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVAQDLVITEPDCGTMAGLVMTPFIQGGDVIENL
GTRVLGRVVAEDVKKAGSDEVILPRNTLIDEKLANFLEEQGVDEVKVRSVVSCESTFGVC
AKCYGRDLARGHQVNPGESVGVMAAQSIGEPGTQLTMRTFHVGGAASRTSAANSVQVRNK
GTVRFHNVKTVQHAKGHLVSTSRSGEIGIADDLGRERERYKLPYGASILLKDGEAVEAGG
IVATWDPHTHPLVTEVAGKVRFSQIADGVTVTSKTDDATGMTTIEILPVTSRPASGKDLR
PAVVLDTVDGGEQFYFLPQNTILSVRDGETIGVGDVIGRVPQETSRTRDITGGLPRVADL
FEARKPKEHAILAEVSGIVSFGKETKGKNRLVITPDDGSEIYEELIPKWRTINVFEGEHV
NRGETISDGPQNPHDILRLKGEVALTNYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKV
EITDGGDTSFIKGEQVDYIRVVQENQAVLAQNKFPAKFDRQLMGITKASLSTDSFISAAS
FQETTRVLTEAAVTGKEDDLRGLKENVVVGRLIPAGTGLAYHLERRRQEAEAAEFELQND
FSDVDQALSQAFNQEF
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctcgatatcatgcgcaaaaagacggactcagacggtcatgctcctgta
gagtttgatcgcatccgtattggtcttgcgtcaccagaaatgattaagtcgtggtctcat
ggtgaagttaaaaagcctgaaaccattaactaccgtaccttcaaaccagaacgtgacggt
ttgttctgtgccaaaatctttggtccagttaaagattacgaatgcttgtgtggtaaatac
aagcgtatgaaatacaaaggcgtcatctgtgaaaaatgtggcgttgaagtaacaactgca
aaagttcgtcgtgaacgtatgggtcacatcgagctggcatctccagtagctcacatctgg
ttcttaaaatcactgccgagccgtatcggtctgttattagacatgaccttacgtgatatc
gaacgtgttctgtatttcgaatcttatgtagtgactgacccaggtatgactccatttgag
aaataccagcttctgaacgatgaagaatacttcaatgcgttggaagagcacggtgatgaa
ttcacagcgaaaatgggtgcagaagcggttcaggacctgttaaaagacatcgatcttgaa
aacgaaatctcacgcctgcgtgaagaaattccacaaacaacctctgagacgaaactgaaa
aaagcgtctaagcgtttgaaattgatggaagcgttcaaagagtcgaacaacaagccagaa
tggatggtaatgaatgtactgccagtacttccgccagaccttcgtccgctggttccgctt
gaaggtggccgtttcgcaacgtctgacctgaacgacctttaccgtcgtgtgattaaccgt
aacaaccgtttgaagcgtcttcttgaccttgcagcgccagacatcatcgtacgtaacgaa
aaacgtatgttacaagagtctgtagatgcattgcttgataacggtcgtcgtggtcgtgca
attaccggttcgaacaaacgtccgctgaaatctttggccgatatgatcaaaggtaagcaa
ggtcgtttccgtcagaacttgttgggtaaacgtgttgactattcaggccgttcggtgatt
accgtaggtcctactttacgtttgcaccaatgtggtcttccgaagaaaatggcactggaa
ctgttcaagccgttcatctttgcgaaactgcaagcgtctggtcaagccactaccattaaa
gctgcgaagaaaatggttgagcgcgagacgccagaagtttgggacgttcttgcatctgtg
atccgtcagcatccagtgatgttgaaccgtgcgccaacccttcaccgtttgggtctgcaa
gcgtttgaaccgatcctgattgaaggtaaagcgatccgtctgcatccgctcgtttgtgct
gcgtttaacgccgacttcgacggtgaccagatggcggtacacgtaccattaacacttgaa
gcgcaattagaagcgcgtgcgttaatgatgtcgaccaacaacattctgtctccagccaac
ggtgagccaatcatcgtaccgtctcaggacgtggtcttgggtctttactacatcacccgt
gatgcggtaaatgccaaaggtgaaggcatggtgttcgcggatacgcatgaagttaaccgt
gcccttgcaaccggtcaggttgatttgcatgctcgcgtaaaagcgcgtgtgtaccaaact
gtgatcaatgacaacggtgagcgtgagcaacaaactattgttgtggatacgacaccaggt
cgctgcctgctttgggaagttgtgccagaaggtttaagcttcgagcaaattaacgttgag
atgaccaagaaaaacatctccaagttaatcaactcttgctatcgtaaactgggtctgaaa
gacacggtcatctttgctgaccaattaatgtacttgggcttccgtcaagcgacgcgttca
ggtgtatcggttggtatggaagatatggttattccaccaagcaaacaggcgatcattgat
aaggcagaagctgaagttcgtgaaatcgaacaacagttcgaacaaggtttcgtaacggcc
ggtgaacgttataacaaagtcgtcgatatctgggcacgtaccaatgaccaggtcgcgaaa
gcgatgatggacaacttgtctttcaccactgtgaaaaacaaacagggtgaagacgagaag
cagaaatcattcaactcgatctacatgatgtcggattctggtgcccgtggttcggcagct
cagattcgtcagcttgcaggtatgcgtggtctgatggcgaagccggatggctcgatcatt
gaaacaccaattaaggcgaacttccgtgaaggtttgaccgtacttcagtacttcatttca
acgcacggtgcgcgtaaaggtttggccgatactgcactgaaaactgcgaactcgggttac
ctgacgcgtcgtctggttgacgttgcgcaagacttggtgatcacggagccagattgtggc
accatggctggtttagtcatgaccccattcattcagggcggtgacgtgatcgagaacctg
ggtacgcgagtactgggtcgtgtggttgctgaagacgtgaagaaagccggttcagatgaa
gtgattctgccacgtaacaccttaattgacgaaaaacttgcgaacttcctggaagagcaa
ggtgtcgatgaagtgaaagtacgttcagtagtatcatgtgaatcgaccttcggtgtgtgt
gcgaaatgttatggtcgtgaccttgcacgcggtcatcaggtgaaccctggtgaatctgtg
ggtgttatggcggcacaatcaattggtgagccaggtacacagttaaccatgcgtaccttc
cacgtgggtggtgcggcaagccgaacttctgctgccaacagcgttcaagtacgtaacaaa
ggtaccgtacgtttccacaacgtgaaaactgtacaacatgccaaaggtcacctggtatcg
acctctcgttcaggtgaaattggtattgcagatgacttaggtcgtgagcgcgagcgctat
aaactgccttacggtgcgtcaatcttgctgaaagatggcgaagctgtagaagcaggcggt
atcgtggcgacttgggatccgcatacccatccactggtaactgaagttgcaggtaaagta
cgtttcagccagatcgctgatggcgtcactgtaacctcgaaaacagacgatgcaaccggt
atgactacaatcgaaatcttgccagtgacttcacgtcctgcgtcaggtaaagatttacgt
cctgctgttgtgttagacaccgtggatggtggtgaacagttctacttcctgccacaaaac
accattctttcggttcgcgatggcgaaaccattggtgtgggtgacgttattggtcgtgta
ccacaagaaacttcacgtactcgtgatattaccggtggtttacctcgcgttgcagacttg
tttgaagcacgtaaaccaaaagagcatgcgattttggcagaagtgtcaggtatcgtgagc
ttcggtaaagagaccaaaggtaagaaccgtctggtgattaccccggatgatggttcagag
atttacgaagagctgattccgaaatggcgtaccattaacgtgttcgaaggcgagcatgtg
aaccgtggtgaaaccatttctgatggtccacaaaacccgcatgacatcttacgtctgaaa
ggtgaagtggcgttgaccaactacatcgtgaatgaagttcaggacgtttaccgtctgcaa
ggtgtaaaaatcaacgacaagcacattgaagtcatcgtacgtcaaatgctgcgtaaagtt
gaaatcactgacggtggtgataccagcttcatcaaaggcgaacaggtggattacatccgc
gtggttcaagaaaaccaggctgtacttgcacagaacaagttcccagcgaagtttgatcgc
cagttgatgggtattaccaaagcatcgctgtcgacggattcgttcatctctgctgcatcg
ttccaggaaaccacacgtgtgttaactgaagcggctgtaaccggtaaagaagatgatcta
cgtggtctgaaagaaaacgttgttgttggtcgtctgatcccagcgggtacaggtttggct
taccacttagagcgtcgtcgtcaggaagcagaagctgcagaatttgaactgcaaaatgac
ttctctgatgtagaccaagcattaagtcaggcatttaaccaggaattctaa
DBGET
integrated database retrieval system