Arcobacter iocasae: LXN10_02875
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Entry
LXN10_02875 CDS
T11121
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aie Arcobacter iocasae
Pathway
aie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LXN10_02875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aie03019
]
LXN10_02875
Enzymes [BR:
aie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LXN10_02875
Messenger RNA biogenesis [BR:
aie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LXN10_02875
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
XHE62141
LinkDB
All DBs
Position
complement(546512..547954)
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AA seq
480 aa
AA seq
DB search
MTFKELGLIEPLLKAIQDKGYTKPSPIQEQAIPIILEKHDVLAGAQTGTGKTAGFTLPLL
QILSSKESKSTKPEIRALILTPTRELAAQVAQSVDDYGKYLPLKTAVIFGGVGINPQKAL
IRKGVDIVIATPGRLLDHIEQKTIDISHVEHFILDEADRMLDMGFIRDIRKVLALLPEHR
QNLLFSATFSDEIKKLSDGILNKPKLIEVARRNTSSEMVSQVIHLVDKEKKKILLSKLIK
EGDWRQVLVFTRTKHGANKLSQHLESDGISATAIHGNKSQGARTKALADFKAGAVRVLVA
TDIAARGIDIDQLPHVVNFELPNVAEDYVHRIGRTGRAGNEGQAVSLVCIDEHDYLRGIE
KLIKTSIKKVLIEGFEVDPSIKAEPINNGRNKGRNNSNSRSTPKKEFSSENNRRRDKKPF
RNSDEPKRSEKSSSPKGKLSNEGKKFKESSSNSKFASSKPSQSRTDSRSNRQRRPRVQKD
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagaacttggtttaattgaaccattattaaaagcaattcaggataaaggt
tatacaaaaccaagtcctattcaagaacaggctattcctattattttagaaaaacacgat
gttttagcaggtgctcaaacgggtactggtaaaactgctggatttacacttccactatta
caaatattaagcagtaaagaatcaaaaagtactaagccagaaattagagctttaatttta
acaccaacacgagaattagcagctcaagttgctcaaagtgttgatgattatgggaaatat
cttccattaaaaactgcagttatttttggtggagttggaataaatccacaaaaagcactt
attagaaaaggagttgatatagttattgcaacgcctggaagactgttagaccatattgaa
caaaaaacaatagatatctcacatgttgaacattttatccttgatgaagcagatagaatg
ttagatatgggatttataagagatataagaaaagtacttgcacttttaccagaacataga
caaaatcttttattctctgcaacattttctgatgagattaaaaaattatctgatggaata
ttaaataaaccaaaattaatcgaagtagctagaagaaatacttcatctgaaatggtatct
caagtaatacatttagtagataaagagaaaaagaaaatacttttatctaaacttataaaa
gagggtgattggagacaagtacttgtctttactagaacaaaacatggtgcaaacaaactt
agccaacatttagaaagtgatggaataagtgcaactgcaattcatgggaataaatctcaa
ggtgctagaacaaaagctttggctgactttaaagcaggagctgtaagagtacttgtggca
actgatattgcagcaaggggaatagatattgaccaacttccacatgtggttaatttcgaa
ttaccaaatgttgctgaagattatgttcatagaatcggaagaacaggaagagctggaaat
gaaggtcaagctgtatctttagtatgtattgatgaacatgattatttaagaggaatcgaa
aaacttatcaaaacttctataaaaaaagttttaatagaaggttttgaagtagatcctagt
ataaaagcagaaccaattaataatggtagaaataagggcagaaataactcaaattcacga
agtacacctaaaaaagagttttcaagtgaaaataatagaagaagagataaaaaacctttc
agaaatagtgatgagccaaaaagaagtgaaaaatcatcttctccaaaaggaaagctaagt
aacgaaggtaaaaaatttaaagagtcttctagtaactcaaaatttgcttcttcaaaacct
agtcaatcaagaactgatagcagatcaaatagacaaagaagaccaagagttcaaaaagat
taa
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