Arcobacter iocasae: LXN10_04480
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Entry
LXN10_04480 CDS
T11121
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aie Arcobacter iocasae
Pathway
aie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LXN10_04480 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aie03019
]
LXN10_04480 (recQ)
03400 DNA repair and recombination proteins [BR:
aie03400
]
LXN10_04480 (recQ)
Enzymes [BR:
aie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LXN10_04480 (recQ)
Messenger RNA biogenesis [BR:
aie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LXN10_04480 (recQ)
DNA repair and recombination proteins [BR:
aie03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LXN10_04480 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
XHE62431
LinkDB
All DBs
Position
complement(887042..889147)
Genome browser
AA seq
701 aa
AA seq
DB search
MNNKHKILKDIFGHEHFRSFQEEVVDSIINKQDVLTILPTGGGKSLCYQLPTLLMDGVTV
VISPLIALMQDQIKALNDLDIKAEMISSSQSGEENSFTMQKLLRGELKFIYVAPERFTSN
EFVGVLQRININYFVIDEAHCVSAWGHEFRAEYRNLDRLKRLFPSTPIAAFTATATKKVE
ADIASNLNLQGARHFRAKTHRDNLDIKVEPRITNGKKQILNFLKTHKGLCGIIYTFTRKE
AESTAQFLCENGYASKAYHAGLSPAIKDEVYDAFVYEKIDIVVATIAFGMGIDKSNIRFV
IHTSLPKTLENYYQEIGRAGRDGDMSYVYLLYSKSDEVKRKIQIEDAIDVGYKQTGLDKL
EAMYRYCVSNNCRHKIIANYFEDEIDDCKTLCDNCTKGEIEQVDVSVDAQKFLSAVYRSD
QRFGTNHIIDILRGSKNQKLLEFGHDKLSVYGLGADKSKNEWVAIADKLIDMQAVGLGEF
RVLKLNNLGMLILKGKEKLLIDSDKLGIAQKLEEETTELSFDEELYEKFRTLRREIALEH
EVPAYVIFGDKTLKELASKLPITKEEMLDINGVGLVKYEKYGDAFLALCKSIKEEFSEKL
EEKAPLKKLTKTYLETFELIQDEKTVEEIAQIRDLGLTSILSHVSVLSEHEKISKEKKEE
LLKPLEIPQNIKSWIEEGLNLDSIKELRKQLYLYEYLSKEI
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgaataataaacacaaaatactaaaagatattttcggacatgaacactttagaagcttt
caagaggaagtagtagacagtatcatcaataaacaagatgtactaaccatcttaccaact
ggtggtggaaaatcactatgttatcaactcccaaccttactcatggacggagttacagtc
gtaatctctccacttattgcccttatgcaagaccaaataaaagcacttaatgatttggat
ataaaagctgaaatgataagttcatctcaaagtggtgaagaaaatagctttactatgcag
aagcttttacgaggtgagttgaagtttatttatgtggcacctgagcgatttacttctaat
gagtttgttggagtattacaacgaatcaatatcaactattttgttatcgatgaagctcac
tgtgtatctgcttggggtcatgaatttagagctgaatatagaaaccttgatagactaaaa
agacttttcccaagtactccaattgcagcttttactgcaactgctacaaaaaaagtggaa
gcagatattgcttctaatttaaacttgcaaggtgcaagacactttcgtgctaaaacacat
agggataaccttgatataaaagttgaacctagaattacaaatggtaaaaaacagatatta
aacttcctaaaaactcacaaagggctttgtgggattatctatacttttactcgaaaagaa
gcagaatcaacagcccagtttttatgcgaaaatggctatgcctcaaaagcttatcatgca
ggcttatcaccagctattaaagatgaagtttatgatgcttttgtttatgagaagattgat
atagttgtggcaactattgcttttggtatggggattgataaatcaaatattcgttttgtc
atacatacatctttgcctaaaacacttgaaaattattatcaagagataggtagagcaggt
cgtgatggggatatgtcttatgtatatttactttactcaaaatctgatgaggtaaaaaga
aaaatacaaatagaagatgccatagatgtgggatataagcaaacagggcttgataaacta
gaagccatgtatcgatattgtgtatcaaataattgtcggcataaaatcatcgcaaactat
tttgaagatgagatagatgattgtaagaccttgtgtgataattgtactaagggagagatt
gagcaagtagatgtaagtgttgatgcacaaaagtttttaagtgctgtttatagaagtgac
caaagatttgggacaaatcatattatcgatatattgagaggttcaaaaaatcaaaagctc
ttagaatttggacatgataaacttagtgtttatggtttgggcgcagataaaagtaaaaat
gaatgggtagcaatcgctgataaacttatagatatgcaagctgtaggtttaggtgaattt
agagttttaaaactcaacaatcttggaatgctaatattaaaaggtaaagaaaaacttcta
atagatagcgataaacttggcatcgctcaaaagcttgaagaggaaacgacggaacttagt
tttgatgaagaattgtatgagaagtttagaactttgagaagagagatagctttggagcat
gaagtaccagcttatgtgatatttggggataaaactttaaaagagttagcttcaaaactt
ccaatcacaaaagaagagatgctagatatcaatggagtagggcttgtaaaatatgaaaaa
tatggagatgcttttttagctttgtgtaagagtataaaagaagaatttagtgaaaagtta
gaagaaaaagctccgttgaaaaaacttacaaaaacatatctagaaacttttgagttaatt
caagatgaaaaaacagtggaagaaatagcacaaataagagatttgggtttgacttctatt
ttatcacatgtttcagttttaagtgagcatgaaaaaatatcaaaagagaaaaaagaagag
cttttaaaaccacttgaaatccctcaaaatataaaatcttggatagaagagggtttaaat
ttggattcaataaaagagttgcgaaaacagttatacttgtatgagtatttatctaaagaa
atataa
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