Arcobacter iocasae: LXN10_09805
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Entry
LXN10_09805 CDS
T11121
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aie Arcobacter iocasae
Pathway
aie03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LXN10_09805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aie03400
]
LXN10_09805
Enzymes [BR:
aie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LXN10_09805
DNA repair and recombination proteins [BR:
aie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LXN10_09805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XHE60457
LinkDB
All DBs
Position
1953189..1956158
Genome browser
AA seq
989 aa
AA seq
DB search
MNGLFEFFKEKNDCKLLIVSDDKEAQEASDVLSYNEKKPFVLADFRANFGDDLLSFSEEL
QNITKTLNEFYTYKKQNKVLVIPLRTASFKMPVEKCFDSFKIEFASTIDLEKLKDKLYNW
GYYFVDIVTSEGEVSLRGDILDICPLGAVKGFRVSLFDDEVESIREFDIEDQKSSKEEID
SFNITPAFLALDESEIDRINEELETVESDAFIKDIHSLGFWYLDDLGEYLPSKFDSYITY
NALDELEEAYIFEAKRIDKEKFLTLPKIPKAKKYQIIQPANVKEFLTFHDGKKHTIISTT
EAKVKSFDLDLADKKIKYVFEPYIINLVSDDEVIISLNKEIKKKRKKKIKLVLDELLVND
FVVHEQHGIGQYKGIEPVVVMGAKRDFVIVQYANEDKLLIPVENIDLIDRYVADGSSYAV
VDTLGKGSFAKLKDKVKDRLFAIANDIIKLAAARELVNGIKINCDKKILKDFSTSAGFDY
TKDQKRSINELFDDLSSGKVMDRLLSGDVGFGKTEVAMNALLAVILDGHQALFVCPTTLL
ASQHFHSMKKRFDEYGIKMAQLDGKTTAKEKTYVKKALESGDIDLVVGTHSLLDIKTKDL
ALVIIDEEHKFGVKQKEKLKELREDVHIFSMSATPIPRTLNLALSKLKGMSSLLTPPTER
LGVRTYVKEFEIKLIKEIVLREKRRGGQLFYVHNNIASMESKKADIQEILPNIKIEMIHS
KITQVKAEKLIEDFNDGKFDILLATSIVESGLHLPNANSMIIDGADRFGIADLHQLRGRV
GRGHKEGFCYFIVEDKKKITSDAIKRLLALESNSYLGSGTALAHQDLEIRGGGNIIGEAQ
SGHIKQIGYGLYLKMLEDTLAVLSGESKEESQVVDIKLAISAFISHDYIVEDRVRLELYR
RLGKAKSKEAIYEIEEEMEDRFGKPDIPTKQFLELIMIKVLALQKEIKTVSSYEMNVTFT
KNDDTKETIKSPSKDDDDIIATALKYLRK
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
ttgaacggcttatttgaattttttaaagagaaaaatgattgtaaattattaattgtaagt
gatgataaagaggctcaagaggcctctgatgtcttatcttacaatgagaaaaaacctttt
gtattagctgactttagggcaaactttggagatgatttattatctttttctgaagaatta
caaaatatcacaaaaacattaaatgaattttatacttataaaaaacaaaataaagtatta
gttatacctttacgaacagcttcttttaaaatgccagttgaaaagtgttttgactctttt
aaaatagagtttgcctcaaccattgatttagaaaagttaaaagataaactttacaattgg
ggatactattttgtagatattgttacaagtgagggagaagtgtctcttcgtggtgatatt
cttgatatttgccctttaggagctgttaaaggctttagagtaagtttgtttgatgatgag
gttgaaagtatcagagagtttgatatagaagatcaaaaatcatcaaaagaagagatagat
tcttttaatattacccctgcttttttagctttagatgaatctgagatagatagaatcaat
gaagaacttgaaactgttgaaagtgatgcttttataaaagatattcactctttaggtttt
tggtacttagatgatttaggtgaatatttaccttcaaagtttgattcatatattacttat
aatgcccttgatgaattagaagaagcttatatctttgaggcaaaaagaatagataaagag
aagtttctaacacttccaaaaataccaaaagcaaaaaaataccaaataatacaaccagca
aatgtaaaagagtttttaacttttcatgatggcaaaaaacatactatcatttcaacaact
gaagccaaagtaaaaagttttgatttagacttagctgacaaaaaaataaaatatgttttt
gaaccatatattataaatcttgtaagtgatgatgaggtaattatctctttaaataaagag
ataaagaaaaaaagaaaaaagaaaatcaaactagtccttgatgaactacttgtaaatgat
tttgttgtacatgaacaacatggtattggacaatacaaaggaatagagcctgttgttgta
atgggtgcaaaaagagactttgtaatagttcaatatgcaaatgaagataagcttttaata
ccagttgaaaatatagatttaatagatagatatgtggctgatggaagttcatatgctgtt
gttgatacacttggtaagggaagttttgccaaactaaaagataaagtaaaagatagacta
tttgcaattgcaaatgatattataaaattagcagctgctagagaacttgtaaatggtatt
aaaataaattgtgataaaaaaatattaaaagattttagcactagtgcgggatttgactat
actaaagatcaaaaaagaagtataaatgagctatttgatgatttaagtagtggaaaagtg
atggatagattgctttctggtgatgttggttttggtaaaacagaagttgctatgaatgca
cttttagcagttattttagatggacatcaagctctttttgtatgtcctactactttgttg
gcttctcaacattttcatagtatgaaaaaaaggtttgatgagtatggcataaaaatggct
caacttgatggaaaaacaactgcaaaagaaaaaacctatgtgaaaaaagcactagaaagt
ggagatatagatttagtagttggaactcactctttacttgatattaaaacaaaagattta
gccttggttataattgacgaagagcataaatttggtgtaaaacaaaaagagaaattaaaa
gaactaagagaagatgttcatattttctcaatgagtgcaactccaattcctcgaacccta
aatctagccctatcaaaactaaaaggtatgagttcgcttttaactcctccaactgagaga
ttgggagtaagaacttatgttaaagagtttgagataaaacttattaaagagatagtttta
agggaaaaaagaagaggtggacaacttttttatgtgcataataatattgcttctatggag
agtaaaaaagcagatattcaagagattttaccaaatataaaaattgagatgattcactct
aaaatcactcaagtaaaagctgaaaaattaatcgaagatttcaatgatgggaaatttgat
attttattagcaacttcaatagtagaatcaggacttcacttaccaaatgcaaactcaatg
ataattgatggtgcagatagatttggaatagcagatttacatcaactaagaggaagagta
gggagagggcataaagaaggtttttgttattttatagttgaagataagaaaaaaatcaca
agtgatgctataaaaagattacttgctttagagtcaaattcatacctaggaagtggaaca
gccttagcccaccaagacttagaaataagaggtggtggaaatatcataggtgaagctcaa
agtggacatatcaaacaaataggatatggcttatatctaaaaatgttagaagatacactt
gctgttttaagtggtgaatcaaaagaagagagtcaagtagtagatataaagcttgctatt
tctgcctttatttcacatgattatatagttgaagatagagtaaggttagagctttataga
cggcttggaaaagcaaaatcaaaagaagctatttatgaaattgaagaagagatggaagat
agatttgggaaaccagatattcctacaaaacaatttttagaactaattatgataaaagtt
ttagctttacaaaaagagataaaaactgtatcaagttatgaaatgaatgtaactttcact
aaaaatgatgatacaaaagagacaataaaatcaccaagtaaagatgatgatgatattatt
gccactgctttaaagtatttaagaaaataa
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