Arcobacter iocasae: LXN10_15135
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Entry
LXN10_15135 CDS
T11121
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
aie Arcobacter iocasae
Pathway
aie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LXN10_15135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aie03019
]
LXN10_15135
03016 Transfer RNA biogenesis [BR:
aie03016
]
LXN10_15135
Enzymes [BR:
aie01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LXN10_15135
Messenger RNA biogenesis [BR:
aie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LXN10_15135
Transfer RNA biogenesis [BR:
aie03016
]
Prokaryotic type
tRNA degradation factors
LXN10_15135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH_2
S1_RRP5
DUF8048
Motif
Other DBs
NCBI-ProteinID:
XHE61490
LinkDB
All DBs
Position
complement(3047848..3050025)
Genome browser
AA seq
725 aa
AA seq
DB search
MSTVCEFELNGKDEIFEFNKVAKQANGSVLAKCGNAVVLATVVSEFDNPGTEDFTPLTVQ
YIEKAYAAAKIPGGFFKRESKPSELETLTSRIIDRSLRPLFPKGYVYPTTITVMVLSADK
DVDLQTLALNAASAALYTSNIPVKKSVAGVRVAKIDGEYIVNPNVMDMVNSTLDLYVAGS
KDELLMIEMRAISSEDMVEVDIEAFSKVHKTNEMTEEELVEAISVAQIALKEANETYETG
FENVCKEKHEVELVEFTIPEDLIKHVKSTYLNDVKDAVKKLAKSERATELKDLAKKIAKD
EYCTSNEFPFENVYEAVSIVKKEVVRAMIVNEHVRADGRGLKTVRPISIETNILPSAHSS
CLFTRGETQALVVATLAGAKDGQMFETLNEKSTSMENFMVHYNFPGFSVGEAKPMFGVGR
RELGHGNLGKRALEATIDRDFGDTVRLVSEILESNGSSSMATVCGGSLALKAAGVPISAL
VAGVAMGMVVEGDKHCVLTDIMGLEDHDGDMDFKVAGPKTGITALQMDIKLGGIELSVLK
EALLQAKEGREHILTLMEEASAEIVPSPALPLMEQFAIDPSKIMVVIGKAGSTIKEIIEK
FSVSIDLDRDSGNVKVAGDNKQNVLDACAHIKTISDNAPSRKQNEKIIFDSLYKEEEVLE
GVVERIVDFGAFMKLPKGGEGLLHISKISKERVKNVSDVLSVGDKVELKVLKVSRDRIEL
ASANI
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagtatgcgaatttgaattaaatggaaaagatgagatttttgagtttaataaa
gttgcaaaacaagctaatgggtcagttttagcgaaatgtggtaacgcagttgtattagca
acagttgtaagtgagtttgataatcctggtactgaagattttactccattgacagtgcaa
tatattgaaaaagcatatgcggcagcaaaaattcctggtggttttttcaaaagagagagt
aaaccaagtgaattagaaactttgacttcaagaattatagatagaagtttaagaccactt
ttcccaaaaggttatgtttatcctacaacaattacagttatggttttaagtgcagataaa
gatgttgatttacaaacattagctttaaatgctgcaagtgctgctttatatacttctaat
atccctgtaaaaaaatctgttgcaggtgttagagttgcaaaaattgacggagaatatatt
gtaaatccaaatgttatggatatggtaaattcaactttagatttatatgtagcaggttct
aaagatgaacttcttatgattgagatgagagctatttcatctgaagatatggttgaagta
gacattgaagctttttcaaaagttcataaaacaaatgaaatgacagaagaagagttagtt
gaagctatttcagttgctcaaatagctttaaaagaagctaatgaaacatatgaaactggc
ttcgaaaatgtttgtaaagaaaagcacgaggttgaattagttgaatttaccattcctgaa
gatttgataaagcatgtaaaaagtacatatttaaatgatgtaaaagatgcagttaaaaaa
ttggcaaaaagtgaaagagcaactgagttaaaagatttagctaaaaaaattgcaaaagat
gaatattgcacttcaaatgaatttccttttgaaaatgtttatgaagcagtttcaattgta
aaaaaagaagttgtaagagcaatgattgtaaatgagcatgtaagagctgatggaagaggt
ttaaaaactgttagacctatatctattgaaacaaatatcttaccatctgctcactcttct
tgtttatttacaagaggtgaaacccaagccttagttgtagcaactttagcaggtgctaaa
gatgggcaaatgtttgaaacattaaatgaaaaatcaacttctatggaaaatttcatggtt
cactacaatttccctggattttctgtaggtgaagcaaaacctatgtttggtgtaggaaga
agagaattaggacatggaaatttagggaaaagagcattagaagctactattgatagggat
tttggagatacagttagattagtatctgaaatcttagagtcaaatggttcttcatcaatg
gcaacagtatgtggaggttctctagctttaaaagcagcaggagtaccaatatcagcttta
gttgcaggtgttgctatgggtatggttgttgaaggtgataaacattgtgtattaacagat
atcatgggattagaagatcatgatggagatatggattttaaagttgctggtccaaaaaca
ggaattactgcgttacaaatggatattaaacttggtggaatagagttaagtgttctaaaa
gaggctcttttacaagcaaaagagggtagagaacatattttaactcttatggaagaagca
tctgctgaaattgttccaagtccagccttaccattaatggaacaatttgcaattgatcct
agcaaaatcatggtagttattggtaaagcaggttctacaattaaagaaattattgaaaag
ttctctgtatctattgatttggatagagatagtggtaatgttaaagttgctggtgataat
aaacagaatgtattagacgcttgtgcacatattaaaacaatttcagataatgctccttca
agaaaacaaaatgaaaaaattatctttgattctttatataaagaagaagaggttttagaa
ggtgtagttgagcgaatagttgattttggtgcatttatgaaactaccaaaaggtggtgaa
ggtctgttacatatttctaaaatatctaaagagagagtaaaaaatgtctctgatgtttta
agtgttggtgataaagtagaattaaaagtattaaaagttagtagagatagaattgagtta
gcttcagctaatatttga
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