Aurantivibrio infirmus: NBRC116181_01000
Help
Entry
NBRC116181_01000 CDS
T11901
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aif Aurantivibrio infirmus
Pathway
aif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NBRC116181_01000 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aif03021
]
NBRC116181_01000 (rho)
03019 Messenger RNA biogenesis [BR:
aif03019
]
NBRC116181_01000 (rho)
Transcription machinery [BR:
aif03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NBRC116181_01000 (rho)
Messenger RNA biogenesis [BR:
aif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NBRC116181_01000 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
S1CSD-TOTE-2
AAA_25
AAA_22
ResIII
Mor
DUF3086
Motif
Other DBs
NCBI-ProteinID:
BFR62557
LinkDB
All DBs
Position
complement(131159..132418)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTDLKTKPIEELIGIAKEMGLDNMARSRKQDVIFNILKRHAKSGEDISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDFIAGKIRPPKEGERYFALLKVSEIN
FDKPENSRNKILFENLTPLFPNQRLTLEAGNGSTEDLTGRIIDLVSPIGKGQRGLIVAPP
KAGKTIMMQHIAQSIIRNNPECHLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTIVPSSGKVLTGGVDAHALERPKRF
FGAARNIEEGGSLSIIATALIDTGSKMDEVIYEEFKGTGNLELHLDRKIAEKRIYPAINI
RRSGTRREELLMKEDELQRVWILRKLLHDMEDVAATEFLAGKLKDFKTNDEFFMSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaactgatctaaaaaccaaacctattgaagaactaattggcatcgctaaagaa
atggggctagataatatggcccggtctcgaaagcaggatgttattttcaacatcctaaag
cgtcatgcaaaaagtggcgaagatatctccggggatggcgtactcgaaattttacaagat
ggatttggatttctacgatctgcagatagttcatatttagctgggcccgatgatatctac
gtatcacccagtcaaattcgacgatttaatttacgcactggtgacttcattgcggggaaa
attcgtcctcctaaagaaggcgaacgttattttgctttattaaaggtctcggaaatcaat
ttcgataaacctgaaaactctagaaacaaaattctttttgaaaaccttacccctcttttt
ccaaatcagcgtttaactttagaagccggtaatggctctactgaggatttgacgggtcgc
attattgatctagtatcaccaatcggaaaagggcaacgcggacttatcgttgctccgcca
aaggccggtaaaacgatcatgatgcagcatattgcgcaatcaataattcgtaacaacccc
gaatgtcacttgatcgttttgttaatcgacgaacgtcctgaagaagtaacagagatgcaa
cgatccgtgcgcggagaagttgtcgcctctacttttgacgagccacctacccgtcacgtg
caagtcgctgagatggtaattgaaaaagcgaagcgcttagtagaacacaaaaaagacgtc
gtcattttactcgactcaattactcgactagcgcgagcatacaacactatcgtaccttca
tcagggaaggtcctaaccggtggtgttgacgcccacgcacttgagaggccaaaacgtttc
ttcggtgctgcacgaaatatcgaagaaggtggcagcctatcgattattgctaccgcgctg
attgataccggttcaaaaatggacgaggttatttacgaggaatttaaaggtacgggcaac
ttagagctacatcttgatcgaaaaattgcagaaaagcgtatctaccccgcaattaatatt
cgtcgttctggcacccgccgcgaagaattactgatgaaggaagacgaattacaacgcgtc
tggattctacgtaaattgctacatgacatggaagacgtcgcagcaacagaatttcttgct
ggaaaactgaaagactttaaaactaacgatgagttttttatgtcgatgaagcgaaaataa
DBGET
integrated database retrieval system
