Aurantivibrio infirmus: NBRC116181_25850
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Entry
NBRC116181_25850 CDS
T11901
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aif Aurantivibrio infirmus
Pathway
aif03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aif00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NBRC116181_25850 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aif03021
]
NBRC116181_25850 (rpoB)
03400 DNA repair and recombination proteins [BR:
aif03400
]
NBRC116181_25850 (rpoB)
Enzymes [BR:
aif01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NBRC116181_25850 (rpoB)
Transcription machinery [BR:
aif03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NBRC116181_25850 (rpoB)
DNA repair and recombination proteins [BR:
aif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NBRC116181_25850 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
BFR65042
LinkDB
All DBs
Position
complement(3013676..3017761)
Genome browser
AA seq
1361 aa
AA seq
DB search
MAYSYTEKKRVRKDFGKWKGVMDVPYLLAIQLDSYQKFTQSKLETDNRIDIGLQAAFKSV
FPIVSYSGNAALEYVSYVMGKPAFDVQECTLRGATYAVPLRVKVRLIIYDKESSNKAIKD
IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARV
IPYRGSWLDFEFDPKDLVFVRIDRRRKLPATILLRALGYEAEEILDMFFQSSACHIKKDG
TFVLDLEPVRLRGEVASFDIKDKKGKVIVEEGRRITARHVSQMEKANMTQLEVSNEYLLG
RALAKNIIDTDSGEVLFECNTEITEEVIAKLLEAKIEKFETLYTNELDHGAFISDTLRAD
PTRTELEALVEIYRMMRPGEPPTKESAEALFQNLFFSSVRYDLSAVGRMKFNRRLGIEGE
EGEGTLSREDIVLVLKTLVEIRNGNGVVDDIDHLGNRRVRSVGEMAENAFRVGLVRVERA
VKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNDYGFLESPYRRI
ENCKVTDQIDYLSAINEADYVIAQASAELDKNGKLTEELVSVRHQNEFTLKSPEDVQYMD
VSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKADKPVVGTGMERIVAADSGV
CVVAKNGGVIESVDAGRIVVRVNNDEVATGDAGVDIYNLIKYTRSNQNTCINQRSIVRKG
DRITRGDILADGPSVDMGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ
ELTCIARDTKLGSEEITADIPNVGEGALSKLDESGVVYIGAEVGPSDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPTATKGTVIDVQVFTRDGLEKDQRSLDIEKAQLD
EVRKDLNEEYRIVETATFERLRATLVGQKVNSGAGFKKGAVLSEEDLAGLDGDSWFKLRM
ADDSLNEQLDRASEQLVERRRILDEKFDDKKKKLTTGDDLPPGVLKIVKVYVAIKRRIQP
GDKMAGRHGNKGVISVIMPVEDMPHDKNGEPVDIVLNPLGVPSRMNVGQILETHLGMAAK
GLGVKINAMIQEQRKIAEIRDFLEEIYNKTGDTKDKEDLKGLNDEEILELAKNLCGGVPM
ATPVFDGAKETEIKALLRLADLSDTGQTFLFDGRTGDQFERPVTVGYMYMLKLNHLVDDK
MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRT
KMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGINMELEQDK
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtgtccgcaaggattttggtaagtggaaaggc
gtcatggacgttccttacctgctggcgattcagttagattcctaccaaaaatttacgcaa
tccaaactcgagaccgataatcggatcgacattggtttgcaagccgcttttaagtcggtt
tttccaattgtcagttactcaggtaacgctgcgctggaatacgttagctatgtgatgggt
aagccggcatttgatgtccaagaatgtaccttacgcggggccacttatgcggtgccttta
cgcgtaaaagttcgtttgattatctacgataaagaatcgtcaaataaagcgattaaagat
atcaaagaacaagaagtttatatgggcgaaatcccattgatgaccgacaacggaaccttc
gttattaacggaaccgagcgagtcatcgtatctcagttgcatcgatcccccggtgtattc
tttgatcacgataaaggtaagacccattcatcaggtaagttactttattctgcacgtgta
attccttaccgcggttcatggttggatttcgaattcgatccaaaagatcttgtatttgta
cgaatcgatcgacgacgtaaattaccggcaacaattttgcttcgtgctttaggatacgag
gctgaagaaattctcgatatgtttttccagtcgagtgcttgccacattaagaaagacggc
accttcgttctggatttagagccagtgcgtttgcgcggtgaagttgcttcttttgatatt
aaagataaaaaaggcaaagtgattgttgaagaaggacgccgcatcactgcacggcatgtt
tctcaaatggaaaaagccaacatgactcagttagaagtatctaatgagtatttgttgggt
cgtgcattggccaagaatattattgatacggattcaggcgaagtattgtttgaatgtaat
acggaaattactgaagaagttattgcgaaattacttgaagccaaaattgaaaaattcgaa
acgctctacaccaatgagttagatcacggtgcatttatctccgatactttgcgtgctgat
ccaaccagaactgagctggaagccttggtggaaatctaccgcatgatgcgacctggtgag
ccgccaactaaagagtcagcagaagcgcttttccaaaatttattcttctcttcggtccgc
tacgatttgtcagcggttggtcgcatgaagttcaatcgtcgcttgggcattgaaggggaa
gaaggcgaaggtactttgtcccgtgaagatatcgtgctggttctgaagaccttagtagaa
attcgcaacggtaacggtgttgttgatgatatcgatcaccttggtaatagacgtgttcgc
tctgtcggagaaatggctgagaacgccttccgtgttggtttggtgcgagttgagcgtgct
gtaaaagagcgcttgtcgatggctgaatctgaaggtttgatgccacaagatttaattaac
gcaaaaccggttgctgcagctgttaaagagttttttggctccagtcagttgtctcagttt
atggatcaaaataatccattatctgaagttactcacaagcgtcgtgtttctgctttagga
cctggtggtttgacacgagagcgtgctggttttgaagtacgcgatgtgcatccaacccat
tacggccgagtttgcccaattgaaactcctgaagggccaaatattggtttgatcaattct
ttggcaacttatgcgcgaacaaatgattacggttttctagaaagcccttatcgacgcatc
gaaaattgtaaagtaaccgatcaaatcgattacctttccgcaattaacgaagcggactac
gtaatcgcgcaggcctcagctgaacttgataaaaatggcaagttaactgaagaattggtt
tcagtgcgtcatcagaatgaatttaccttgaagtcaccggaagatgttcaatatatggat
gtttctccgcgtcaggtggtctcggtagctgcttccttgattccattcttggagcacgat
gatgctaaccgtgctttgatgggatcgaacatgcagcgtcaagctgtgccaacgttaaag
gctgacaagccagttgttggtactggtatggagcgtattgttgcggcggattcgggtgtt
tgtgtggtcgctaagaatggcggtgtgattgaaagtgttgatgcgggtcgaatcgtagtt
cgtgttaacaatgacgaagttgcaaccggtgatgcaggcgttgatatttataacctcatc
aagtacacacgttcaaaccaaaatacctgtattaatcagcgatcaattgttcgcaaaggc
gatcgtattactcgcggcgatattcttgccgacgggccttcagttgatatgggtgaattg
gcgcttgggcagaatatgcgaatcgcatttatgccttggaatggttacaacttcgaagat
tcgattttagtttcagagcgtgtcgttcaagaagatcgtttcactaccattcacattcaa
gaattaacctgtattgcacgtgatacaaaattaggcagcgaagaaattactgctgatatt
cccaatgttggtgaaggtgctttatctaagctagatgaatctggcgtggtttacatcggc
gccgaagtgggaccaagtgatattttggtcggtaaggtaacccctaaaggtgaaacgcag
cttactccagaagaaaaactgctacgtgcaatctttggcgaaaaagcatctgatgtgaaa
gatacttcgttgcgtgtgccaacggctaccaagggtaccgttatcgacgttcaagtattt
actcgcgatggtttagagaaagatcaacgttctttagatatcgaaaaagcacagctggac
gaagttcgcaaagatcttaacgaagagtatcgtattgttgaaacggcaactttcgaacgt
ttacgcgctactttggttggtcaaaaagttaatagtggcgctggctttaagaaaggtgca
gttttaagtgaagaagatcttgcaggtttagatggcgatagctggtttaaattgcgcatg
gctgacgattcgctaaatgagcaattggatagagcgtctgaacagttggttgagcgtcgt
agaattctcgatgagaaattcgatgataaaaagaaaaagctaactactggtgatgatctt
cctcctggcgtattaaagatcgtaaaagtctacgtcgctattaagcgccgtattcagcct
ggcgataagatggcggggcgacacggaaacaaaggtgtaatctccgtaatcatgccggtt
gaggatatgcctcatgataaaaatggcgagcctgttgatatcgttttaaatccactcggt
gtgccttcgcgaatgaacgtcggtcaaatccttgaaacccacttaggtatggcggcgaaa
ggtttgggcgttaaaatcaatgcgatgattcaagagcagagaaaaattgcagagattcgt
gatttcttggaagaaatttataacaaaaccggcgataccaaagacaaggaagatttaaaa
ggcttaaatgatgaagaaattttagagttagcgaaaaatctgtgtggcggcgtgccaatg
gctacacctgttttcgatggcgctaaagaaactgaaatcaaagcgcttttacgcttggct
gatttatcagataccgggcagactttccttttcgatggccgtaccggtgatcaatttgaa
agacccgttaccgttggctacatgtacatgcttaaactaaaccacttggttgatgacaaa
atgcatgcgcgttctacgggttcttatagtcttgttacgcaacaacctctcggtggtaaa
gcacagtttggtggccagcgtttcggagagatggaggtctgggcacttgaagcatacggt
gctgcttataccttacaagaaatgcttaccgtcaaatccgatgacgttgcgggtcgaacc
aaaatgtataaaaacattgtggatggcgaccaccgtatggagccgggaatgccggaatct
ttcaacgtattagtgaaagagattcgctcactcggtatcaatatggaattagaacaagat
aaataa
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