Auritidibacter ignavus: QDX25_12245
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Entry
QDX25_12245 CDS
T09017
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aig
Auritidibacter ignavus
Pathway
aig03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aig00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QDX25_12245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aig03021
]
QDX25_12245
03400 DNA repair and recombination proteins [BR:
aig03400
]
QDX25_12245
Enzymes [BR:
aig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QDX25_12245
Transcription machinery [BR:
aig03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QDX25_12245
DNA repair and recombination proteins [BR:
aig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QDX25_12245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TMP_3
YlqD
GemA
DUF2935
Syntaxin
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WGH81531
LinkDB
All DBs
Position
2695487..2699374
Genome browser
AA seq
1295 aa
AA seq
DB search
MSTENSFGLMRIGLATADQIRNWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
YCGKYKRVRYKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITDVDEELRHQDLPNLQVEHDQEVKHLADQRDADIAAVAKDLEDE
LAQLESEGAKSSATTKARNTAEKTMAQIRKRADDEIKKLEELWETFKNLKVSDLIGNESM
FRSMRDKYGEYFEGSMGAESIQRRLENFDLQAEAEKLRETIQNGKGQRKTRALKRLKVIN
AFLTTNNSPQGMVLDAVAVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQESVDSLFDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLRLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERTR
PQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSPEAQAEARVLMLSSHNILKPSDGRAVAVPSQDMIIGLNHLTTVREDEVGAGR
HFTHVGEATMAFDNNELHLNAPVTITVQNFVPSEAVSAPEGWEPGQPATIETTLGKVVFN
DLLPDDYPWVDERQTKGTLGALVNDLAERYSLIDTATTLDNLKNAGFHWGTWSGVTVAIS
DITSDFDKVAVMAKYEDQASKVQGQYDTGLISDDERRSELNDIWSRATDEVAEAMRAGMG
PLNTINRMVTSGARGNWLQVRQIAGIRGLVTNPKGEIIPRPIKSSYREGLSVLEYFSATH
GARKGLADTALKTANSGYLTRRLVDVSQDVIIREHDCGTRRGLTETIATANADGELVLDE
NVETSCFARTLATDVTTDDGTVLAEAGSDVGDVLIGKLISNGITEIKVRSVLTCESQVGT
CAKCYGRSMATGQLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRIQ
ELFEARTPKGVAPISEVAGRVRIEDDDRQIQLILTPDDGSDEIAYPVLRRSRLLVEDGEH
VAVGTQLVSGAVDPKQVLRVLGPRAAQKFLVKEVQNVYQSQGVGIHDKHVEVIVRQMLRR
ITVIESGDTDLLPGELTDRTEFVNANRAAVAQGQRPASGRDELMGITKASLATDSWLSAA
SFQETTRVLTQAAMEGKTDPLLGLKENVIIGKLIPAGTGLDRYSNVVVEPTEEAKNKLFT
SPIAYPDFDYPGMEQIGGDYHAISLDDYGLGGDFR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgtccactgaaaactcattcggcctcatgcgcattgggctagccactgcggatcagatt
cgcaattggtcctatggtgaggtcaagaaacccgaaaccatcaactaccgcactctcaag
cccgaaaaagatggtctgttctgtgagcgcatcttcggaccgacccgcgactgggagtgc
tactgcggtaagtacaagcgcgtgcgctataagggcatcatctgcgagcgctgtggtgtg
gaagtcacccgctccaaggtccgccgtgagcgcatgggccacatcgagctggccgcaccg
gtgacccacatctggtatttcaagggtgtgccctcccgcctgggctacctgttggatttg
gcaccaaaggacctggagaaggtcatctacttcgctgcctacatgatcaccgatgttgac
gaagaacttcgtcaccaggatctgcctaatctgcaggtggaacacgaccaagaggtcaag
cacctggctgaccagcgggatgccgacatcgccgcagtggccaaggatctcgaggatgag
ctggcccagctggaatccgagggtgccaagtcctcagctaccaccaaggcacgcaacact
gctgagaagaccatggcccagatccgtaagcgcgccgacgacgagatcaagaagcttgaa
gagctctgggagaccttcaagaacctcaaggtctcggacttgatcggtaacgagtcgatg
ttccgctccatgcgtgacaagtacggcgagtacttcgaaggttccatgggtgccgaatcg
attcagcgtcgtttggagaacttcgatctacaggcagaagctgaaaaattgcgcgaaacc
attcagaacggtaagggccagcgcaagactcgtgccctgaagcgtctaaaggtcatcaac
gccttcttgaccaccaataactccccgcagggtatggtgttggacgcggtggccgtgatt
ccgcctgagttgcgcccgatggtccagctcgatggtggtcgttttgccacctcggacctc
aacgacctctaccgtcgtgtgatcaaccgcaataaccgtctgaagcgtctgctggatctg
ggtgctcccgagatcatcgtgaacaatgaaaagcggatgctacaggagtccgtggactcg
ctattcgacaacgggcgtcgtggtcgtccggtgaccggaccaggtaaccgtgcgctgaag
tcgctatcggacatgctcaagggtaagcagggccgtttccgtcagaacctgttgggcaag
cgtgttgactactccggccgttcggtgattgtggtgggcccgcagttgcgcctgcaccag
tgtggtctgcccaagcagatggctctggagctgttcaagcccttcgtcatgaagcggctg
gtggacctcaaccacgcgcagaacatcaaatccgccaagcgcatggtagagcgcacccgc
ccccaggtatgggacgtgctggaagaagtcattaccgaacacccggtactgctcaaccgt
gcaccgactctgcaccgtctgggtattcaggccttcgagccgcagctggtggaaggtaag
gccattcagttgcacccgctggtctgtgctgcgttcaacgcagacttcgatggtgaccag
atggccgtgcacctgccgctgagccctgaggctcaggccgaggctcgggtgctgatgctc
tccagccacaacatcctcaagccctcggacggccgcgcggttgctgttccgtcgcaggat
atgattatcggcctgaaccacctgaccaccgtgcgtgaggacgaggtcggcgccggccgt
cacttcacccacgtgggtgaagccaccatggccttcgacaacaacgaactgcacctcaat
gcaccggtgaccatcaccgtgcagaacttcgtgccatccgaggcggtatcagctccggaa
ggctgggaacccggtcagccggcaaccatcgaaactacgctgggtaaggtcgtgttcaac
gacctgctgccggatgactacccctgggttgatgagcgtcaaaccaagggtaccctgggc
gcactggttaatgatttggctgagcgctactcgctgatcgacaccgctaccaccctggac
aacctgaagaacgctggtttccactggggtacctggtctggtgtgactgtggcaatttcc
gacatcacctcggacttcgacaaggttgcggtgatggccaagtacgaagaccaggccagc
aaggtccagggccagtacgacaccggtctgatttctgacgacgagcgccgcagtgaactc
aacgacatctggtcgcgggcaaccgacgaggtcgccgaggccatgcgcgctggtatgggt
ccactgaacaccattaaccgcatggtgacctcgggagcgcgtggtaactggctacaggtt
cgtcagatcgctggtatccgtggtctggtgaccaacccgaagggtgagattatcccgcgt
ccgattaagtcctcctaccgtgagggtctgtcggtgctggaatacttctccgcaacccac
ggtgctcgtaagggtctggccgataccgcgttgaagaccgcaaactccggttacctcact
cgtcgtctggtcgacgtctcccaggacgtcatcattcgcgagcacgactgtggtacccgc
cgtggtctgaccgaaaccattgctaccgccaacgcggacggcgagttggtcttggatgag
aacgtggagacctcgtgcttcgcacgcaccctggccaccgacgtcaccacagacgacggc
accgtgctggctgaggccggctcggacgtcggcgacgtgctgatcgggaagctgatcagc
aacggcatcaccgagatcaaggtccgctccgtgctgacctgtgaatcccaggtgggcacc
tgtgcgaagtgctacggtcgctcgatggcaaccggccagctggtcgatattggtgaagct
gtcggtattatcgctgcgcagtccattggtgagcccggtacccagctgaccatgcggacc
ttccacaccggtggtgtggcatcggctgacgatattacccagggtctgccccgtattcag
gagctcttcgaggcccgtaccccgaagggtgtggccccgatttccgaggtggccggtcgc
gttcggatcgaagacgacgaccgtcagatccagctgatcctcaccccggacgacggctcc
gacgaaatcgcctacccggtgttgcgtcgctcccgcctgctggtggaagacggcgagcac
gtcgctgttggtacccagctggtctccggtgcggttgaccccaagcaggtgctgcgtgtg
ctcggaccgcgggccgctcagaagttcctggttaaggaagttcagaacgtgtaccagtcc
cagggcgtgggcatccacgacaagcacgtggaagtcattgttcgccagatgctacgtcgc
attaccgtgatcgagtccggcgacaccgacttgttgcccggcgaactcaccgaccgcacc
gagttcgtcaacgccaaccgcgctgccgtggcccagggtcaacgtccggcctcaggccgt
gacgagctgatgggtatcaccaaggcgtcgctggctacagactcgtggctgtcggctgca
tccttccaggagaccacccgcgttctaacacaggcggctatggagggtaagaccgatccg
ttgctgggtctgaaggagaacgtgatcatcggtaagctgatcccggccggtaccggcttg
gaccggtactccaacgtggtcgtggaacccaccgaggaagccaagaacaagttattcacc
tctccgattgcttacccggacttcgattacccgggtatggagcagatcggtggcgactac
cacgcgattagcttggatgactacggtctgggtggcgatttccgctaa
DBGET
integrated database retrieval system
