Actinoplanes ianthinogenes: Aiant_17380
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Entry
Aiant_17380 CDS
T07429
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aih
Actinoplanes ianthinogenes
Pathway
aih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aiant_17380 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aih03019
]
Aiant_17380 (cshA)
03009 Ribosome biogenesis [BR:
aih03009
]
Aiant_17380 (cshA)
Enzymes [BR:
aih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Aiant_17380 (cshA)
Messenger RNA biogenesis [BR:
aih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Aiant_17380 (cshA)
Ribosome biogenesis [BR:
aih03009
]
Prokaryotic type
rRNA helicases
Aiant_17380 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
WSD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCJ41081
UniProt:
A0ABM7LPB7
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All DBs
Position
1869696..1871399
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AA seq
567 aa
AA seq
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MDEDPTTSTDAGFAELGLRPELLRALADLGYEEPTPIQREAIGPLVAGHDLVGQAATGTG
KTAAFALPLLQRLTTGTSDDPVALVLVPTRELAEQVSQAVHRYGRELNVRVLPVYGGQPI
HRQLQVLRRGVDVVVGTPGRILDHIERETLRLDAIRTVVLDEADEMLDMGFAEDIEAILA
ETPEERQTVLFSATMPPRIDAIARRHLRDPQRIRMGRDTATADALPTVRQSAYLVARAHK
AAALGRVLDVEAPTAAIVFCRTREEVEEVTESLNGRGFRAEALHGGLSQDQRDRVMGRLR
AGTTELLVATDVAARGLDVEQLTHVINFNVPSAPEAYVHRIGRVGRAGRTGAAITLAEPR
EQRMLKAIERLTGQRIVLEKLPTVTDLRARRLEMVRTTVVEGLDADDLDRFRSVLASLTD
EADLEQVALACLNLLHEANGGDVDEPEIPSIAPQREREFDNRAARRNGPGADRYNDRGPG
RGRSADSAVTRVFVGLGRRAGLRPQDLVGAIAGEAGLPARDIGAIQITDRFSLVEVPEAD
ADRVIRALSHSTIRGRRPTVRRDRPHR
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaccccactaccagcaccgatgcaggcttcgctgagctggggctgcgtccc
gaactgctgcgtgccctagccgatctcggttacgaggagcccactcccatccagcgtgag
gccatcggcccactcgtcgccgggcacgatctggtgggccaggcagcgaccggcaccggc
aagacggccgcgttcgccctcccgctgttgcagcgtctgaccaccggcacctccgatgac
cccgtcgcgctggtgctcgtgccgactcgggagctggccgagcaggtgtcgcaggccgtg
catcggtacgggcgggagctgaacgtccgggtgcttccggtctacggcgggcagccgatc
caccggcagttgcaggtgctgcggcgcggggtggacgtcgtcgtcggcacgccggggcgg
attctcgatcacatcgagcgggagacgctgcggctcgacgccatccggaccgtggtgctg
gacgaggccgacgagatgctcgacatgggcttcgccgaggatatcgaggcgatcctggcc
gagacgcccgaggagcggcagaccgtgctgttctcggccaccatgccgccccggatcgac
gcgatcgcccggcggcacctgcgtgacccgcagcggatccggatggggcgggacaccgcc
acggccgacgcgctgccgaccgtgcggcagagcgcctacctggtcgcccgcgcgcacaag
gccgccgctctcggccgggtgctcgacgtcgaggcgccgaccgccgcgatcgtcttctgc
cggacccgcgaagaggtggaagaggtcaccgagagcctgaacggccggggcttccgcgcc
gaggccctgcacggcggcctgagccaggaccagcgtgaccgggtgatgggccgtctccgg
gccggcaccaccgagctgctggtcgccaccgacgtggccgcccgcggcctggacgtggaa
cagctgacccacgtgatcaacttcaacgtgccgtcggccccggaagcctacgtgcaccgc
atcggccgggtcggccgcgccgggcgcaccggcgccgccatcaccctggccgagccgcgc
gagcagcgcatgctcaaagccatcgagcggttgaccggtcagcggatcgtactggaaaag
ctccccaccgtgaccgacctgcgggcccggcgcctcgagatggtccgcaccaccgtcgtg
gaaggtctggacgccgacgacctggaccgtttccggtcagtcctggcctccctcaccgac
gaggccgacctggagcaggtcgccctcgcctgcctgaacctgctgcacgaggcgaacggc
ggcgacgtcgacgagccggagatcccgtcgatcgcaccccagcgcgaacgcgagttcgac
aaccgcgccgcccgccgcaacggccccggcgccgaccgctacaacgaccgcggcccgggc
cgcggccgctccgccgacagcgccgtgaccagggtcttcgtcggcctgggccggcgcgcg
ggcctgcgcccgcaggacctggtcggcgcgatcgccggcgaggcgggcctgcccgcccgc
gacatcggcgccatccagatcaccgaccgtttctcgctggtcgaggtcccggaggcggac
gccgaccgggtcatccgggccctgagccacagcaccatccgaggccgccgccccaccgtc
cgccgagaccgcccccaccgctga
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