KEGG   Actinoplanes ianthinogenes: Aiant_33100
Entry
Aiant_33100       CDS       T07429                                 
Name
(GenBank) hypothetical protein
  KO
K03628  transcription termination factor Rho
Organism
aih  Actinoplanes ianthinogenes
Pathway
aih03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aih00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Aiant_33100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aih03021]
    Aiant_33100
   03019 Messenger RNA biogenesis [BR:aih03019]
    Aiant_33100
Transcription machinery [BR:aih03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Aiant_33100
Messenger RNA biogenesis [BR:aih03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Aiant_33100
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N Spore_III_AA AAA_25 AAA_22 VWA_2 NACHT PIP5K
Other DBs
NCBI-ProteinID: BCJ42653
UniProt: A0ABM7LTS7
LinkDB
Position
complement(3664239..3666233)
AA seq 664 aa
MSDTTDVTSGVSDVADGAGTTATATKRRRGGTGLSAMLLPELQSLAASLGISGTARMRKG
ELITAITERQSGGSAAAEPAPRPRTEAAPAAAPAQPAPAEKPKTAAAPAETTPAAPPAAE
AAPAAERPSRRSRERAARESAPRETAPAAQPAVETAPAPAAAATETAPADTTERVERGER
PERSDRNRDRQRNQRDGERGDRGERSERGERGERNTDRNDRTDRTDRSGDRGPRADQGHD
DDDNDGEGGRRSRRSRFRDRRRGRDRDDNQRDDSRRDGGREPHVAEDEVLVPVAGILDVL
DNYAFVRTTGYLSGPNDVYVSMSQVKKYGLRRGDAVTGAVRSAPRDGEQRRDKYNPLVRL
DTINGMEPDEARRRPEFYKLTPLYPQERLRLETEPHILTTRVIDLVMPIGKGQRALIVSP
PKAGKTMVLQALANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVVAATFDRPPQDH
TTVAELAIERAKRLVELGHDVVVLLDSVTRLGRSYNLAAPASGRIMSGGIDSTALYPPKR
FLGAARNIENGGSLTILATALVETGSMMDTVIFEEFKGTGNAELKLDRKIADKRVFPAVD
VSASGTRKEEILMGKEELAIIHKLRKVLSSLESGAALDLLLDRLKQTRTNIEFLMQIAKS
TPGE
NT seq 1995 nt   +upstreamnt  +downstreamnt
ttgagcgacaccaccgacgtgacgtcgggtgtttctgacgtcgctgacggcgccggcacc
accgcgaccgccacgaagcgccgccgcggcggcaccgggctgtccgcgatgctgctgccc
gagttgcagagcctcgccgcctccctgggcatctccggcaccgcccggatgcgcaagggc
gagctgatcaccgcgatcaccgagcggcagagcggcggatccgccgccgccgagccggct
ccccggccgcggaccgaggccgctccggccgccgcccccgcgcagccggccccggccgag
aagccgaagaccgcagccgccccggccgagaccaccccggccgcaccgccggccgccgag
gccgccccggccgcggagcgcccgtcccggcgcagccgcgagcgggccgcccgtgagtcg
gcgccccgcgagaccgccccggcggctcagccggccgtcgagaccgcgccggccccggcc
gccgcggccaccgagaccgcgccggccgacaccaccgagcgggtcgagcggggcgagcgc
cccgagcgcagcgaccgtaaccgtgaccggcagcgcaaccagcgcgacggcgagcggggc
gatcgcggggagcgctccgagcgtggcgagcggggcgagcggaacaccgatcgcaacgac
cgcaccgaccgcaccgaccggtccggcgaccggggtccgcgcgccgaccagggtcacgac
gacgacgacaacgacggcgagggcggccgccggagccggcgcagccgcttccgggaccgt
cgccgcggccgcgaccgcgacgacaaccagcgtgacgacagccgtcgtgacggtggccgg
gagccgcacgtcgccgaggacgaggtgctcgtcccggtggccggcatcctggacgtgctg
gacaactacgcgttcgtccggaccaccggttacctctccgggccgaacgacgtctacgtg
tcgatgtcgcaggtcaagaagtacgggctgcgccgcggcgacgcggtgaccggcgcggtg
cgctccgccccgcgcgacggcgagcagcggcgggacaagtacaacccgctggtccgcctg
gacaccatcaacgggatggagcccgacgaggcccgccggcgtcccgagttctacaagctc
accccgctctacccgcaggagcgcctgcggctggagaccgagccgcacatcctcaccacc
cgggtcatcgacctggtcatgccgatcggcaagggccagcgcgcgctgatcgtctccccg
cccaaggccggtaagacgatggtgctccaggccctggcgaacgccatcacccggaacaac
ccggagtgccacctgatggtggtgctggtggacgagcgtccggaagaggtcaccgacatg
cagcggtcggtgaagggcgaggtcgtcgcggccacgttcgaccgtccgccgcaggaccac
accacggtcgccgagctcgccatcgagcgggccaagcggctggtcgagctgggtcacgac
gtggtcgtgctgctcgactcggtgacccgcctcggccggtcgtacaacctggcggcgccg
gcctccggccggatcatgtcgggtggtatcgactcgaccgcgctctacccgccgaagcgg
ttcctcggcgcggcgcgcaacatcgagaacggtggctcgctcaccattctcgcgaccgcg
ctggtggagaccgggtcgatgatggacacggtgatcttcgaggagttcaagggcaccggc
aacgccgagctcaagctggaccggaagatcgctgacaagcgcgtcttcccggccgtggac
gtctccgcctccggcacccgtaaggaagagatcctgatgggcaaggaggagctggcgatc
attcacaagctccgcaaggtgctcagctcgctggagtccggcgcggctctggacctcctg
ctggaccggctcaagcagacccggaccaacatcgagttcctgatgcagatcgccaagtcg
acgcctggcgagtaa

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