Actinoplanes ianthinogenes: Aiant_49350
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Entry
Aiant_49350 CDS
T07429
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aih
Actinoplanes ianthinogenes
Pathway
aih03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aih00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Aiant_49350 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aih03021
]
Aiant_49350 (rpoB)
03400 DNA repair and recombination proteins [BR:
aih03400
]
Aiant_49350 (rpoB)
Enzymes [BR:
aih01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Aiant_49350 (rpoB)
Transcription machinery [BR:
aih03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Aiant_49350 (rpoB)
DNA repair and recombination proteins [BR:
aih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Aiant_49350 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5716_C
Motif
Other DBs
NCBI-ProteinID:
BCJ44278
UniProt:
A0ABM7LY89
LinkDB
All DBs
Position
5401348..5404788
Genome browser
AA seq
1146 aa
AA seq
DB search
MAASRPAKTSRTSSAYAPRRVSFGRITEQLEVPNLLALQTDSFDWLVGNEAWQARTTDDP
HAHSGLAEILEEISPIEDFSGTMSLSFSSPRFDEVKASIEECKEKDLTYCAPLFVTAEFT
NNTTGEIKSQTVFMGDFPMMTPKGTFVINGTERVVVSQLVRSPGVYFTKEPDKTSDRDLT
SVKVIPSRGAWLEFDIDKRDTVGVRIDRKRRQAVTVLLKAIGWSADQIRERFGWSELLMT
TLEKDHIAGQDEALLDIYRKLRPGEPPTRENAQTLLDNLFFNPKRYDVAKVGRYKFNKKL
EIDVPIVRGTLSEEDIVKTVEYLCRLHAGEEGYEADDIDHFGNRRLRTVGELIQNQVRVG
LSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQTNPLAGLTHR
RRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGALSTFARVNPFGFI
ETPYRKVENGVVTDEVHYLTADEEDRFIKAQANAVLSSDNTFAEDRVLVRRKGGEVDYVP
GEQVDYMDVSPRQMTSVATAMIPFLEHDDANRALMGANMQRQAVPLVKAEAPLVGTGMEY
RAAVDAGDVVVAEVAGVVEDLCADYVTVHQDDGHRRTYLLHKFRRSNAGSCVNQKPVVFE
GDRVEAGQVIADGPCTDEGEMALGRNLLVAFMCWEGHNYEDAIILSQRLVQQDVLTSIHI
EEHEVDARDTKLGPEEITRDIPNVSEEMLADLDERGIIRIGAEVVPGDILVGKVTPKGET
ELTPEERLLRAIFGEKAREVRDTSLKVPHGETGTVIGVRTFSREDGDELPPGVNELVRVY
VAQKRKIQDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVDIVLNPLGVPSRMNIGQVL
ETHLGWIAKTGWQIEGDDEEWKRQLRSIEAHESPADSNVATPVFDGAQEEEIKGLLESTL
VNRDGKRLVNGDGKAQLFDGRSGEPLPDPISVGYVYILKLNHLVDDKIHARSTGPYSMIT
QQPLGGKAQFGGQRFGEMECWAMQAYGAAYALQELLTIKSDDVLGRVKVYEAIVKGENIP
EPGIPESFKVLLKELQSLCLNVEVLSSDGVALEMRETDDEVFRAAEELGIDLSRRPNEGV
SSVEEI
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcttcccgccctgcgaagaccagccgtacgtcgagcgcttacgcaccccgccgt
gtctctttcggccggatcaccgagcagctagaggtccccaacctcctcgccctccagacg
gactccttcgactggctggtcggcaacgaggcttggcaggcccggacgacggacgacccg
cacgcccactcgggcctcgcagagatcctcgaagagatcagtcccattgaggacttctcc
ggcactatgtcgctgtccttctcgtctccccgattcgacgaggtcaaggcctcgatcgag
gagtgcaaggagaaggacctgacctactgcgcgccgctgttcgtgaccgcggagttcacc
aacaacacgactggcgagatcaagagccagaccgtgttcatgggtgacttcccgatgatg
acccccaaggggacgttcgtcatcaacggcaccgagcgcgtcgtggtgagccagctcgtc
cgctcgccgggcgtgtacttcaccaaggagccggacaagacctccgaccgcgacctcacc
agcgtcaaggtcatcccgagccggggtgcctggctggagttcgacatcgacaagcgcgac
accgtcggtgtccgcatcgaccgcaagcgtcgccaggccgtcaccgtcctcctcaaggcg
atcggctggtccgccgaccagatccgtgagcgcttcggctggtccgagctgctcatgacg
acgctggagaaagaccacatcgcggggcaggacgaggccctgttggacatctaccgcaag
ctgcgtccgggcgagccgccgacgcgggagaacgcgcagaccctgctcgacaacctcttc
ttcaacccgaagcggtatgacgtcgccaaggtcggccggtacaagttcaacaagaagctc
gagatcgacgtcccgatcgtccggggcacgctctccgaggaagacatcgtcaagaccgtg
gagtacctctgccggctgcacgccggtgaggagggctacgaggccgacgacatcgaccac
ttcggtaaccgtcgcctgcgcaccgtcggcgagctcatccagaaccaggtccgcgtcggc
ctgtcccggatggagcgcgtcgtccgcgagcggatgacgacccaggacgtcgaggcgatc
acgccgcagaccctgatcaacatccgccccgtggtggccgcgatcaaggagttcttcggt
acgtcgcagctgtcgcagttcatggaccagaccaacccgctcgcgggtctgacccaccgt
cgccgtctgtcggcgctcggcccgggtggtctgtcgcgtgagcgggccggcttcgaggtc
cgtgacgtgcacccgtcccactacggccggatgtgcccgatcgagacccccgagggtccg
aacatcggtctgatcggcgcgctctcgacgttcgcgcgggtcaacccgttcggcttcatc
gagacgccgtaccgcaaggtcgagaacggtgtcgtcaccgacgaggtgcactacctcacc
gctgacgaggaagaccgcttcatcaaggcccaggcgaacgccgtgctgtccagtgacaac
acgttcgccgaggaccgcgtcctggtccgccggaagggcggtgaggtcgactacgttccc
ggtgagcaggtcgactacatggacgtgtcgccgcggcagatgacctcggtcgccaccgcg
atgatcccgttcctcgagcacgacgacgccaaccgtgccctcatgggcgcgaacatgcag
cgtcaggccgtgccgctggtcaaggccgaggcgccgctggtcggcaccggcatggagtac
cgcgccgcggtcgacgccggtgacgtggtcgtcgccgaggtcgccggtgtggtcgaggac
ctgtgcgccgactacgtgacggtgcaccaggacgacggccaccgccggacctacctgctg
cacaagttccgccgctcgaacgccggctcctgcgtcaaccagaagccggtcgtcttcgag
ggtgaccgggtcgaggccggccaggtcatcgccgacggtccgtgcaccgacgagggggag
atggccctgggccgcaacctcctggtcgcgttcatgtgctgggagggccacaactacgag
gacgcgatcatcctgtcgcagcgcctcgtgcagcaggacgtgctcacctcgatccacatc
gaggagcacgaggtcgacgcccgcgacaccaagctgggtccggaagagatcacccgcgac
atcccgaacgtcagcgaggagatgctggcggacctggacgagcgcggcatcatccggatc
ggcgccgaggtcgtgcccggcgacatcctggtcggcaaggtcacgcccaagggcgagacc
gagctgaccccggaggagcggctgctccgcgcgatcttcggtgagaaggcccgggaggtc
cgggacacctcgctgaaggtgccgcacggcgagaccggcaccgtcatcggtgtccgcacg
ttctcccgcgaggacggcgacgagctgcccccgggcgtgaacgagctggtccgggtctac
gtggcgcagaagcggaagatccaggacggtgacaagctcgcgggccggcacggcaacaag
ggcgtcatctccaagatcctccccgtcgaggacatgccgttcctcgaggacggcaccccg
gtcgacatcgtgctcaacccgctcggtgtcccctcgcgtatgaacatcggccaggtcctg
gagacccacctcgggtggatcgccaagaccggttggcagatcgagggcgacgacgaggag
tggaagcgccagctccgctcgatcgaggcgcacgagtcccccgccgacagcaacgtcgcg
accccggtcttcgacggtgcccaggaggaggagatcaagggcctgctggagtcgaccctg
gtgaaccgggacggcaagcggctggtcaacggtgacggcaaggcgcagcttttcgacggc
cgctccggtgagccgctgccggacccgatctcggtcggctacgtctacatcctgaagctg
aaccacctggtcgacgacaagatccacgcgcggtcgaccggtccgtactcgatgatcacg
cagcagccgctcggtggtaaggcccagttcggtggccagcggttcggcgagatggagtgc
tgggcgatgcaggcctacggcgccgcttacgcgctgcaggagctgctcaccatcaagtcc
gacgacgttctcggccgcgtgaaggtgtacgaggccatcgtcaagggcgagaacatcccg
gagccgggaatcccggagtcgttcaaggtgcttctcaaggagctccagtcgctgtgcctg
aacgttgaggtgctctccagcgacggtgtggccctggagatgcgcgagaccgacgacgag
gtcttccgggccgcggaggaactcggcatcgacctgtcccggcgtccgaacgagggcgtc
agcagcgtcgaagagatctga
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integrated database retrieval system
