Actinoplanes ianthinogenes: Aiant_53190
Help
Entry
Aiant_53190 CDS
T07429
Symbol
lig_2
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aih
Actinoplanes ianthinogenes
Pathway
aih03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Aiant_53190 (lig_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aih03400
]
Aiant_53190 (lig_2)
Enzymes [BR:
aih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Aiant_53190 (lig_2)
DNA repair and recombination proteins [BR:
aih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Aiant_53190 (lig_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
BCJ44662
LinkDB
All DBs
Position
complement(5830867..5831997)
Genome browser
AA seq
376 aa
AA seq
DB search
MRTPNHRGTTIPGRAIRRQNQYMPDRLDEYRRKRDPARTPEPVPAGTATPDEERHRFVIQ
QHHARSLHWDVRLERDGVLVSFAVPRGLPRDQARNNLAKHTEDHPLEYLDFAGEIPAGEY
GGGRMTIFDQGTYRSDKWRSDEISVTFHGDRTKGRYVFFQTGGADWMVRRMDPPEPGWET
MPGDLRPMLATRASALPGDDAAWGYEMRWSGQRALAYVDGGRVTLGGPGGEPLIAVFPEI
RALGPDLAPIEAVLDGELVVFDGARPDPDRLARRVGARNPKRAADRDPAQFLIYDLLWLD
GHRTTGRLRYAERRELLDGLALAGEHWQTPPFFPGGGRFARDAARSQGLSGVVAKRLDSP
YLPGETSRHWREIDVN
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacacccaaccatcggggtacgacaattccgggccgcgcgatccggcggcagaat
cagtacatgccggaccgtctggacgagtaccgccggaagcgggatcccgcccgcacgccc
gaaccggtcccggccgggacagccaccccggacgaggagcggcaccgcttcgtcatccag
cagcaccacgcccgcagcctgcactgggacgtccggctggaacgcgacggcgtcctcgtg
tcgttcgccgtcccgcgcggcctgccccgtgaccaggcccgcaacaacctggccaaacac
accgaggaccacccgctggagtacttggacttcgccggcgagatcccggccggcgagtac
ggcggcggccggatgaccatcttcgatcagggcacctaccgctccgacaagtggcggtcc
gacgagatcagtgtcacctttcacggtgaccgcacgaaggggcgatacgtcttcttccag
accggtggcgcggactggatggtgcgccggatggacccacccgagcccggctgggagacg
atgcccggcgacctgcgcccgatgctggccacccgggcgagcgccctgcccggcgacgac
gcggcgtgggggtacgagatgcgctggtccgggcagcgtgctctggcgtacgtcgatggc
gggagagtgaccctcggcggacccggcggcgaaccgctgatcgcggtgtttcccgagatc
cgggccctggggccggatctcgcgccgatcgaggcggtcctcgacggcgagctggtggtg
ttcgacggcgcccggccggacccggatcggctggcccggcgagtcggggcgaggaatccg
aaacgggcggcggaccgcgatccggcgcaattcctgatctacgacctgctgtggctggac
gggcaccggaccaccggacgcctccgctacgccgagcgccgcgagttgctcgacggcctg
gccctggcgggcgagcactggcagacgccaccgttcttcccgggcggcggccggttcgcc
cgggacgcggcacgttcgcaggggttgtccggcgtggtggcgaagcgactggattcgccc
tacctgcccggcgagaccagccgccactggcgggagatcgacgtgaactga
DBGET
integrated database retrieval system
