Allofrancisella inopinata: E4K63_04255
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Entry
E4K63_04255 CDS
T06698
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aii
Allofrancisella inopinata
Pathway
aii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4K63_04255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aii03019
]
E4K63_04255
Enzymes [BR:
aii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E4K63_04255
Messenger RNA biogenesis [BR:
aii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E4K63_04255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
ERCC3_RAD25_C
HI1480
P-loop_SecA
AAA_22
PH_NISCH_C
Motif
Other DBs
NCBI-ProteinID:
QIV96080
UniProt:
A0AAE6YHU0
LinkDB
All DBs
Position
complement(942123..943442)
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AA seq
439 aa
AA seq
DB search
MSTNFTKLGLSTQICKALETKGYTNPTPIQEKSIPLILKDNDLMASAQTGTGKTAAFTLP
VIEKLINQPKARSNTTKVLVLTPTRELAAQIEDQVSIYAANTHIRSTVVFGGVSINPQMM
KLRKGVEILIATPGRLLDLYSQNSIKFTDLNTLVLDEADRMLDMGFIHDLKRIHKLLPKK
IQTLMFSATFSPEIKDLAQNFLNNPKSVSADVANTTVEKITQSIITVDKSQKVNALISLI
KRDNWNQVLVFSRTKHGANKIAEKLNDADIKASAIHGNKSQTARTKALADFKSNLITVLV
ATDIAARGIDIQQLPYVINLDLPSVAEDYVHRIGRTARAGQTGIAVSLVSADEVEMLSNI
EHLIGHLLPREELEGFEAQHNVPVTSMSRKTKAKKIDEVKIIAAKRANKSKKSSGHNKDF
SKLIRQKIHANKSVKARAK
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgtctactaattttactaaattagggctttcaacacagatatgtaaagctctagaaact
aaaggttatacaaatccaacaccaattcaagagaaatctattcctcttatattaaaagat
aatgacttaatggcaagtgcacagactggtacaggcaaaactgcagcatttacattacca
gttattgaaaaactaataaaccagcctaaagctagatcaaatacaactaaagttcttgtc
ctaacgccaacaagggagctagcagctcaaatagaagaccaagttagcatatatgctgca
aatacgcatatccgttctacagtagtatttggtggagtaagcataaaccctcaaatgatg
aaattaagaaaaggagtagaaatcctaatagcgacacctggtaggttactagacttatat
agtcaaaattctattaaatttactgacttaaacaccttagttttggatgaagctgataga
atgcttgatatgggctttattcatgacttaaaaagaatccataagctattgcctaagaag
atacaaacactaatgttttcagctactttttccccggagataaaagatttagcccaaaat
tttttaaataaccctaaatctgtttctgctgatgttgctaatacaactgtagaaaaaata
actcaaagtattataactgtagataaatcacaaaaagttaatgctttgatatccctaatc
aaaagagataattggaatcaagtattagtattttcacgtacaaagcatggagctaataag
atagctgagaagcttaatgatgcagatataaaagctagtgctattcatggcaataaaagt
caaactgccagaacaaaagccttagcggattttaaatctaatctgataactgttttagtg
gctacagatatagctgctagaggaatagatattcagcagttgccgtacgttataaatcta
gatttaccgagcgttgccgaagactacgtgcatcgtataggtagaacagcaagggcaggc
caaactggaatagctgtatcattagtaagtgctgatgaagttgagatgctatcaaatatc
gaacatctaataggacatttgttacctcgtgaagaacttgaaggctttgaagctcaacat
aatgtacctgttacaagtatgagtagaaaaacaaaagctaaaaaaatagatgaagtaaaa
attattgcagcaaaaagagcaaacaaaagtaaaaaatcatcaggacataataaagatttt
tctaaattaattagacagaaaatccatgctaataaaagtgtaaaggctagggcaaagtag
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