Allofrancisella inopinata: E4K63_04795
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Entry
E4K63_04795 CDS
T06698
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aii
Allofrancisella inopinata
Pathway
aii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4K63_04795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aii03019
]
E4K63_04795
03009 Ribosome biogenesis [BR:
aii03009
]
E4K63_04795
Enzymes [BR:
aii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E4K63_04795
Messenger RNA biogenesis [BR:
aii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E4K63_04795
Ribosome biogenesis [BR:
aii03009
]
Prokaryotic type
rRNA helicases
E4K63_04795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Utp25_C
AAA_19
CbiA
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIV96181
UniProt:
A0AAE7CQS9
LinkDB
All DBs
Position
complement(1057542..1059236)
Genome browser
AA seq
564 aa
AA seq
DB search
MNSETKKDFSSLGLDQNIVDTVINLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNLDLNDKSRSPQILVLAPTRELAIQVAEQFEAFAKSVTSLSVACIYGGQEYGS
QIRALKNGVQVVVGTTGRVMDHIEKGTLKLDNLRALVLDEADEMLRMGFIDDVRWVLSHI
SDDCQRLLFSATIPEDIADIIKEYLRNPCKIQVKAKTKTANTITQKFIVVKGFRKIDALD
RLLEIEETDGVVIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVEQFKSARSN
ILVATDVVARGIDLERISHVINYDMPNDEDTYVHRIGRTGRAGREGVSISLVTLKEMRFL
RSLERFTNSKLEEVFMPSAKELADSRINDFKNRITSALEKNKSLDKYKEIIIDIRDQLEL
DSEDLLAVLTLLAQDKKGFFPREIQAKEEKRATKRDDRSSRSSDRFNDRDRNNNSRFDKK
RPKRVDIDLTTYRIDVGRENDVQPRNIVGAIANEGGIDSKHICNISIEKDYTLVDLPANL
SAKVINHLKKVWVAGKKLNLTEHR
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgaattcagaaacaaaaaaagattttagctctttaggcttagatcaaaatattgtagat
actgttataaatttagggtatgagaacccaacgccaattcaacagtatgctattccatat
atattatcgggtagagatgtgctaggtcaagcacaaacaggtacgggtaaaacagcagct
tttgcattaccattaattaataatttagatctgaatgataaaagcagatctccacagatc
ttagtattagcgccaactcgagaattagctatacaagtagcagaacaatttgaagctttt
gcaaaaagtgtcacaagtttatctgttgcttgtatctatggtggacaagaatatggttca
caaataagagcacttaaaaatggtgttcaagtagtagtaggtactactggtagagttatg
gaccatattgaaaaaggaacactaaagctagataatctaagagcgttagtattagatgaa
gcagatgaaatgcttagaatgggttttattgacgatgttagatgggttttaagtcacata
tctgatgattgccagagactacttttttcagcaactataccggaagatatagctgatatt
ataaaagagtatttaagaaatccatgtaaaatacaggttaaagcaaaaaccaaaacagct
aatacaattacacaaaaatttatagtagttaaaggttttagaaaaatagatgctttagac
agactattagaaatagaagaaactgatggtgtagtaatatttgttaaaactaagacaagt
acaatagaagtagcagataatttaaaagctcttggttataaagtagctgctataaatggt
gatatgcagcaatctcaaagagaatatattgttgagcaatttaaaagtgctagatctaac
attttagttgctactgatgttgtagctagaggtatagaccttgagcgtattagtcatgtg
attaactatgatatgccaaatgatgaagacacttatgttcacagaattggccgtactggt
agagcagggcgtgaaggagtttctatttctttagtaacgttaaaagaaatgagattttta
cgttcgcttgagcgatttactaattcaaaactagaagaagtatttatgccaagtgctaaa
gaacttgctgatagtaggattaatgactttaaaaatagaataacatctgctctagaaaaa
aataaatccctagataagtataaagaaataataatcgatatacgggatcagttagagctg
gattcagaagatttattagcagtacttacacttttagcacaagataagaaaggctttttc
ccaagggaaatccaggctaaagaagaaaagagagctactaaaagagatgatagatcatcc
agatctagtgataggtttaatgatagagacagaaataataattctaggtttgacaaaaaa
cgaccaaagagagtagatatagatctaactacctatagaatagatgtgggtcgtgaaaat
gatgtacaaccaagaaatatagttggtgctatagcaaatgaaggtggcatagatagtaaa
catatctgtaatatatctatagaaaaagactatactctagttgatttaccagctaatttg
agtgcaaaagttataaatcatcttaaaaaagtttgggtagcaggtaaaaaattaaatctt
actgagcataggtag
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