Agromyces intestinalis: FLP10_12385
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Entry
FLP10_12385 CDS
T09895
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ail
Agromyces intestinalis
Pathway
ail03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ail00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FLP10_12385 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ail03021
]
FLP10_12385 (rpoC)
03400 DNA repair and recombination proteins [BR:
ail03400
]
FLP10_12385 (rpoC)
Enzymes [BR:
ail01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FLP10_12385 (rpoC)
Transcription machinery [BR:
ail03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FLP10_12385 (rpoC)
DNA repair and recombination proteins [BR:
ail03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FLP10_12385 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QEO15120
UniProt:
A0A5C1YIC3
LinkDB
All DBs
Position
2725759..2729664
Genome browser
AA seq
1301 aa
AA seq
DB search
MLDATTFDELRIGLATAEDIRKWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVIDIDEDGRHADLPGLENELRLEIDTIGKQRDARIATLMERKETE
LAELEADGAKADVRKRAEAAADKEMAGVRKSADEQIAHLERVWEDFRTLKVGDLKPEDSV
FQELQDRFGMYFDAYMGAEAIKKRLESFDLAAEADDLHLQIAEGKGQKKIRAIKRLKVVN
SFLQTGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLQHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTQRDGANGEGR
AFSSIAEAILAFDQNRPGDIKLDLGAKVKIRLDGLHFAEGDEPEGFEQGKPFLFETTLGR
AIFNEALPADYPFFNKQAGKSQISQIVNDLAERYPKTEVAATLDRIKDAGFRWATRSGVT
VALSDIVELPQKQEIVSKYEKQAAKVQSQFDKGLTTDLERRQELIQIWTKATDEVAKAMQ
EEFANNPDNTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAE
YFIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTTKGLDLPIAAVDAAT
GELVRDPNVENSVFARSLAADAVNAAGEVIAEAGSDVGDVLIDKLVAAGVESIKVRSVLT
CESAVGVCAACYGRSLATGKLVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDIT
QGLPRVQELFEARTPKGASPIVEAPGRITIDETERQRKVILTPDNGDEPIAYNVLKRSTL
LVEDGQHVELGQQIIVGTVDPKEVLRVKGVREVQKHLVDGVQEVYRSQGVPIHDKHIEVI
VRQMLRKVTVVDHGDTDLLPGELVDRSRYNEINRAALTEGKRTASARQEVMGITKASLAT
ESWLSAASFQETTRVLTEAAMQGKSDPLVGLKENVIIGKLIPAGTGLAKYRNVTVEATEE
ARAERYPNRIFADDATFSEGDLSFVDFDAFTNDDFTPGNYS
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgcaacgacgttcgatgagcttcgtatcggcctggccaccgccgaggacatc
cgcaagtggtcctacggcgaggtcaagaagcccgagacgatcaactaccgcacgctgaag
cccgaaaaggacgggctcttcggcgagcagatcttcggcccctcccgcgactgggagtgc
gcctgcggcaagtacaagcgggtgcgcttcaagggcatcgtctgcgagcgctgcggggtc
gaggtcaccaagtcgtccgtgcgccgtgagcgcatgggccacatcgagctcgccgccccg
gtcacgcacatctggtacttcaagggtgtgcccagccgtctcggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatggtgatcgacatcgac
gaggacggccgccacgccgacctgcccggcctcgagaacgagctccggctcgagatcgac
accatcggcaagcagcgcgatgcgcgcatcgccacgctgatggagcgcaaggagaccgag
ctcgccgagctcgaggccgacggcgcgaaggccgacgtgcgcaagcgcgccgaggccgcc
gccgacaaggagatggccggcgtccgcaagtcggccgacgagcagatcgcgcacctcgag
cgcgtgtgggaggacttccgcaccctcaaggtcggcgacctgaagcccgaggactcggtc
ttccaggagctgcaggaccgcttcggcatgtacttcgacgcctacatgggcgccgaggcc
atcaagaagcgcctcgagagcttcgacctcgcggccgaggccgacgacctgcacctgcag
atcgccgagggcaagggtcagaagaagatccgtgcgatcaagcgcctcaaggtcgtgaac
tcgttcctgcagaccggcaactcgccggctgcgatggtgctcgacgtggtgccggtgatc
ccgcccgagctgcgcccgatggtgcagctcgacggtggccgcttcgccacgagcgacctg
aacgacctctaccgtcgcgtgatcaaccgcaacaaccgccttcgtcgactgctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgtcgcggccgcccggtcacgggcaccggcaaccgtgcgctgaag
tcgctgagcgacatgctgaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactcgggtaggtcggtcatcgtggtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggcgctcgagctgttcaagccgttcgtcatcaagcgcctg
atcgatctgcagcacgcgcagaacatcaaggccgccaagcgcatggtcgagcgcagccgc
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctgaaccgt
gcgcccaccctgcaccgcctgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctccacccgctcgtgtgtgcggcgttcaacgccgacttcgacggcgaccag
atggcggtgcacctgccgctgtcggtcgaggcgcaggccgaggcccgcatcctgatgctg
gcgtcgaacaacatcctgaagccgtcggacggccgcccggtgaccctgccctcgcaggac
atgatcatcggtctgcaccacctgaccacgcagagggacggcgcgaacggcgaaggccgt
gcgttctcgtcgatcgccgaggcgatcctcgcgttcgaccagaaccgcccgggcgacatc
aagctcgacctcggcgcgaaggtgaagatccgtctcgacgggctgcacttcgccgagggc
gacgagcccgagggcttcgagcagggcaagccgttcctgttcgagaccacgctgggccgc
gcgatcttcaacgaggcgctgccggccgactacccgttcttcaacaagcaggccggcaag
agccagatctcgcagatcgtcaacgacctggccgagcgctacccgaagaccgaggtcgcc
gcgacgctcgaccgcatcaaggacgccggcttccgctgggcgacccgttcgggcgtgacc
gtcgcgctctccgacatcgtcgagctcccgcagaagcaggagatcgtgtcgaagtacgag
aagcaggcggcgaaggtccagtcgcagttcgacaagggcctcacgaccgacctcgagcgt
cgtcaggagctcatccagatctggacgaaggccaccgacgaggtcgccaaggccatgcag
gaggagttcgcgaacaaccccgacaacaccatcaaccgcatggtgacgtcgggtgctcgt
ggtaactggctgcaggtgcgcaacatcgccggtatgcgaggcctggtgaacaacccgaag
ggtgagatcatccctcgcccgatcatctcgtcgtaccgcgagggcctgagcgtggccgag
tacttcatcgccacgcacggtgcccgcaagggtctggccgacaccgccctgcgtaccgcc
gactcggggtatctgacccgtcgtctggtggacgtctcgcaggacgtcatcatccgtgag
gacgactgcggcaccacgaagggcctcgacctgccgatcgcggcggtcgacgcggccacc
ggcgaactggttcgcgacccgaacgtcgagaactcggtgttcgcccggtcgctggccgcg
gacgcggtgaacgccgcgggcgaggtcatcgccgaggccggctccgacgtcggcgacgtg
ctgatcgacaagctggtcgcggccggtgtcgagtcgatcaaggtgcgctcggtgctgacc
tgcgagtcggcggtcggcgtctgcgccgcctgctacggccgctcgctcgcgaccggcaag
ctggtcgacctcggcgaggcggtcggcatcatcgccgcccagtcgatcggcgagcccggt
acgcagctgacgatgcgtaccttccacaccggtggttcggcctcggccgacgacatcacg
cagggtcttccccgcgtgcaggagctcttcgaggcccgcacccccaagggtgcgtcgccg
atcgtcgaggccccgggtcgcatcacgatcgacgagaccgagcgtcagcgcaaggtcatc
ctcacgcccgacaacggcgacgagccgatcgcgtacaacgtgctcaagcgttcgaccctc
ctggtcgaagacggccagcacgtcgagctcggtcagcagatcatcgtcggcaccgtcgac
cccaaggaggtcctgcgggtcaagggtgtgcgcgaggtgcagaagcacctggtcgacggt
gtgcaggaggtctaccgctcgcagggcgtgccgatccacgacaagcacatcgaggtcatc
gtccgtcagatgctgcgcaaggtgaccgtggtcgaccacggcgacaccgacctgctgccg
ggtgaactcgtcgaccgttcgcggtacaacgagatcaaccgcgccgcgctcaccgagggc
aagcgcaccgcgtcggcccgtcaggaggtcatgggtatcaccaaggcgtcgctggcgacc
gagtcgtggctgtcggccgcctccttccaggagacgacccgcgtgctcaccgaagcggcg
atgcagggcaagagcgacccgctggtcggcctcaaggagaacgtgatcatcggcaagctg
atcccggccggcaccggcctggcgaagtaccgcaacgtcacggtcgaggcgaccgaagag
gctcgtgccgagcggtaccccaaccgcatcttcgccgacgacgcgacgttcagcgagggc
gacctcagcttcgtcgacttcgacgcgttcacgaacgacgacttcacgccgggcaactac
agctag
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