KEGG   Amygdalobacter indicium: PYS61_05105
Entry
PYS61_05105       CDS       T09413                                 
Name
(GenBank) PolC-type DNA polymerase III
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
aim  Amygdalobacter indicium
Pathway
aim03030  DNA replication
aim03430  Mismatch repair
aim03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:aim00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PYS61_05105
   03430 Mismatch repair
    PYS61_05105
   03440 Homologous recombination
    PYS61_05105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aim03032]
    PYS61_05105
   03400 DNA repair and recombination proteins [BR:aim03400]
    PYS61_05105
Enzymes [BR:aim01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PYS61_05105
DNA replication proteins [BR:aim03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     PYS61_05105
DNA repair and recombination proteins [BR:aim03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     PYS61_05105
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger HHH_6 HHH_3
Other DBs
NCBI-ProteinID: WEG35310
UniProt: A0ABY8C898
LinkDB
Position
1206784..1211355
AA seq 1523 aa
MSVKKAKNLAEFLQDLDKLYGCGFYSRLNDEATKRLAAFPAVLASIKCQVGNAAVRNSDV
LQVSAARPKNFKLNLFFTLQSTFSDYKILYFIERILPQLLPQAGEVELFFDLSALALSMQ
DIAEFFRDIYPYLLKKIQNQVSAQAVCILQTAELNIAHDGVHFCIAPEFYSTFSSELLQI
TAKQFKREFSLDVNLHVDCLAANAKETDTVVLQERNKVLQNLLQQSQTADASLALEQAAT
DVDNNASRSKSKAGKWLKVSDPEYIYGNVPAEMNILPLADFNLQSQKVMLKGKIHGFEAN
VVRDGVNMIVKFALFSDDGAVQCFVYGKAEKLQVLTEKLHDDLLVEAYVEASTNRYTSEP
EAKIIGLKQTHETAGRKDEAVKKRVELHCHSQMSAKDGFAEPKSILRLAAEFGHPACAIT
DHGVVQAYPLMYEEKKALAKKGKNIKLIYGMEGYLVDDGNTVVFGLDVPKTKLTSFVAFD
LETTGLKAGEDKIIEIAAIRYKLNESGNFVESDVFATLVNPGGILSPKTTQLTGIESLDL
VGKPDIETVIKDFHSWLGDDPLVAHNGLFDLGFLRYAAFGIVKGTEPRLKFNNLLIDTVE
MARTFYTGLSNYKLDTVANALHITLENHHRALDDTRCCGEIFIKLLQELQVSDLFTLNEK
AGKESTAQIKQRNKTVLHFIALCKDYLGLYNLYRLVSESHVHYFSTRPRIPRSLLRYFKS
GLLIGSSCEAGEVYRSMHKLYRDANKNMVLAKERLSEYHFKQMARFYDYLEIQPLANNSF
FLRDESSGLRDESDLQNVNRLIIALAEKNKKPYVATCDSHFLHPSQQIYRNMLLSVNGFA
DADFSPCLYFRTTEEMLQCFDYLTEEEKENAVINNPNLLAAEVQDNIPPFPEGTFPPEIK
DAARDINDLVWQEVKERYEYEGKIPDLVYNRVKKELDSIISNGFAIMYYISSKLVKKSNA
DGYFVGSRGSVGSSFVATLCGITEVNPLPAHYVCLKCHYSDFSLSDKYDSGFDLPVKNCP
NCQVPMWQDGQNIPFETFLGFNGDKEPDIDLNFSGEYQSRAHNFIKEMFGADYTFRAGTI
SAYQEKNAIGVVKKYAEMHEQVYSTANILRLASGICGVKRTTGQHPGGIVVIPKERDIYD
FTPIQYPADNTDSSMYTTHFDFNSLHDTILKFDCLGHDAPTQLKRLKDFTDVDFLTLPMN
DPQVMSLYKDTSALKLSEPDVQKVGCLGLPEQGTIMARGMIVETKPSSFYDLVQLAGLSH
GTNVWNGNARDLINDGICNIDQVIGCRDSIMTTLINYNLPSKMAFDIMEKVRKGKGLSEE
QIAKMRECQVPEWYIDSCLKIQYLFPKAHAVAYVMSALRIAWYKVYRKEAFYAVWLGNNI
DEFNAELIIGKSLAEIRKSKEYYFTDLNKRNPREKKLFYILEIVEEMMLRGVQLLPIDLY
KSDAKLFLPEGNNVRPPFAVIPKFPQTTAENIVKARKNGEFLAREDLAVKADVKQAAMEA
LANFHVLDNLPEQNQMDLTDLLG
NT seq 4572 nt   +upstreamnt  +downstreamnt
atgtctgtaaaaaaagcaaagaacttagctgaatttttacaagatttggataaactgtac
ggttgcggcttttacagtcgccttaatgatgaggcgaccaagcgtttagcggcttttcct
gcagttttggcgagcattaaatgtcaagttggaaatgctgccgttcgcaattccgacgtt
ctgcaagtttctgccgctcggccgaaaaatttcaaattgaatttattttttaccttacaa
agtactttttccgattataagatactttattttatcgagcgtatcttgccgcagcttctg
ccgcaggccggagaagttgaattgttttttgatctgtctgcacttgctttgagtatgcag
gatatagccgaatttttccgcgatatctatccttatctgttgaaaaaaattcaaaatcaa
gtcagcgctcaggctgtttgcattttgcagacggcagagctcaacattgctcatgacggt
gttcatttttgtattgcacccgaattttatagtacttttagcagtgaactgttgcagatt
acagcgaaacagtttaagcgggaattttctttggatgtaaatttgcatgtagattgtctt
gctgcaaatgcgaaagagacggatactgttgtattgcaggaacgcaataaagttttacag
aatcttttacagcaaagccaaactgccgatgcgtctctcgcgcttgagcaagccgctaca
gatgtcgataataacgcttcccgcagtaaaagtaaggccggaaaatggctgaaagtttcc
gaccctgaatacatatacggtaacgtaccggcggaaatgaatattttacctttagcggat
tttaatctacagagtcaaaaagttatgctcaagggtaaaattcacggatttgaggctaac
gttgtgcgtgacggcgttaatatgattgtcaaattcgccctcttttcagatgacggtgct
gtccaatgtttcgtctacggaaaagcggaaaaattgcaggttctgacggaaaaattgcat
gatgatttgttggtggaagcttatgttgaagcttctaccaatcgttatacctccgaaccg
gaagccaaaattatcggtctgaagcaaacacacgaaactgccggccgaaaagatgaggcg
gtgaaaaaaagagtcgagctacattgtcacagtcagatgagtgccaaagacggctttgcc
gaaccgaaatctattttacgtctggctgccgaattcggtcatccggcttgtgccatcacc
gatcacggtgtagtgcaggcttatcctctcatgtatgaagaaaagaaagctttagccaaa
aaggggaaaaatattaagttaatttacggtatggaaggctatcttgttgatgacggtaat
acggtagtcttcggtctggatgttccgaaaactaagctgacatctttcgtagctttcgat
ttggaaacaacaggcttaaaagccggagaagataaaattattgaaattgcagctattcgt
tataaactgaatgaaagcggtaattttgtcgaaagtgacgtttttgcaactttggtcaat
cccggcggtattctcagtcctaagactacccaacttacaggtattgagtccttggattta
gtcggtaaacctgatattgaaacggtaattaaggattttcatagttggttgggcgatgat
cctctggtggcgcataacggcctgtttgatttgggatttttacgctacgcggctttcgga
attgtcaaaggtacggaaccgagacttaaatttaacaatttacttattgatacggtagag
atggctcgcactttttataccggtttaagcaattataaacttgatactgttgccaatgcc
ctgcatataactttggaaaaccatcatcgtgctttggacgatactcgttgttgcggtgaa
attttcattaaattactgcaggaattgcaagtcagtgacttatttacgctgaacgaaaag
gccggaaaagaaagcacagctcaaattaagcagagaaataaaacagttttgcattttatc
gctttatgtaaagattacttgggcttatataacctttatcgtctggtatcggaaagccat
gtgcattatttcagcacgcggccgcgaattccccgctctttattacgttatttcaaaagc
ggtttgctgatcggttcttcctgcgaagcgggcgaagtttatcgcagtatgcataaattg
tatcgcgatgcgaataaaaacatggttttagctaaagaaagattaagtgaatatcacttt
aagcagatggctcgtttctacgattatttagaaatccagccgttggccaataacagtttc
tttttgcgggatgaaagcagcggtttaagagatgaaagcgatttgcaaaatgttaatcgt
ttgattattgctttggcggagaaaaataagaaaccttacgtggctacctgtgacagtcat
ttcctccatccttcgcaacaaatatatcgcaacatgctgctcagcgttaacggttttgct
gatgccgatttttcgccttgcctgtatttccggacaacagaagagatgctgcaatgtttc
gattatttaacagaagaagaaaaggaaaatgctgtaattaacaatcccaatcttttggcc
gccgaagttcaggacaatattccgcctttccccgaaggcacgttcccgccggagattaaa
gatgcggcacgtgatatcaatgatttggtttggcaggaagtcaaagaacgttatgaatat
gagggtaaaattcccgatttagtttataatcgggtgaaaaaagaattggattcaattatt
tccaacggttttgccatcatgtattacatttcgtcaaaattggtaaaaaaatccaatgcc
gacggttattttgtcggttcaagaggttccgtcggttcatcttttgtcgctaccttgtgc
ggtattacggaagttaatcctttgccggcccactatgtttgcttaaaatgtcattacagc
gatttttctttgtctgacaagtatgacagcggtttcgatctgccggtaaaaaattgtcct
aactgtcaagtaccgatgtggcaggacgggcaaaatataccttttgaaacttttttaggc
tttaacggtgataaggaacctgatattgatttgaatttttccggagaatatcagagccga
gcacataactttataaaagaaatgttcggggccgattatactttcagagccggaactatt
tccgcttatcaggaaaaaaatgctatcggtgtggtgaaaaaatatgccgaaatgcatgaa
caggtttattcgacggcgaatatattgcgattagcctccggtatttgcggagttaaacgg
acaacaggacaacatccgggaggtatcgttgttattcccaaagaacgggatatttatgac
tttacgcctattcaatatccggctgataataccgacagctcgatgtatactacgcatttt
gatttcaattctttgcatgatacaattttgaaattcgactgtttgggccatgatgcgccg
acgcaattgaaacgcttaaaagattttaccgatgtcgattttctgacgttaccgatgaac
gatccgcaggtgatgtcactgtataaggatacatccgccttaaaattaagtgagccggat
gtgcagaaagtcggttgcttgggtttgccggaacagggaactattatggcgcgcgggatg
attgttgaaacaaaaccgagttctttttatgatttggtccagttggccggtttgtctcac
ggtacgaatgtttggaacggtaatgcccgggatttgattaatgacggtatatgtaatatc
gatcaggttatcggttgtcgtgattcaattatgacaactcttatcaattataatctgccg
tccaaaatggccttcgatatcatggaaaaagtacgtaaaggcaagggcttgagtgaggaa
cagatagccaaaatgcgggaatgtcaggtccctgaatggtacatagattcctgcttaaaa
attcaataccttttcccgaaagcgcacgccgttgcttatgtcatgtcggctttgcgtatt
gcctggtataaagtttatcggaaagaagccttttatgcggtttggttgggaaataatatt
gacgaattcaatgccgagttgattatcggcaaaagtttggctgaaattcgcaaaagtaaa
gagtattattttacggacttaaacaaacgtaatccgcgcgaaaagaagctcttctatatt
ttagaaattgtagaagaaatgatgttgcgcggcgtgcaattacttccgattgatttatat
aagtcggatgccaaactctttttgcctgaaggtaacaatgtccggccgccttttgccgtc
ataccgaaatttccgcaaacgacagcggaaaatattgttaaagctcggaaaaacggcgaa
tttttagccagagaagatttggctgttaaagcggatgtcaaacaggcggcaatggaagct
ttagctaattttcatgttctggataatttgccggaacagaatcaaatggatttaacagat
ttactgggttaa

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