Amygdalobacter indicium: PYS61_05105
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Entry
PYS61_05105 CDS
T09413
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
aim
Amygdalobacter indicium
Pathway
aim03030
DNA replication
aim03430
Mismatch repair
aim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PYS61_05105
03430 Mismatch repair
PYS61_05105
03440 Homologous recombination
PYS61_05105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aim03032
]
PYS61_05105
03400 DNA repair and recombination proteins [BR:
aim03400
]
PYS61_05105
Enzymes [BR:
aim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PYS61_05105
DNA replication proteins [BR:
aim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PYS61_05105
DNA repair and recombination proteins [BR:
aim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PYS61_05105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WEG35310
UniProt:
A0ABY8C898
LinkDB
All DBs
Position
1206784..1211355
Genome browser
AA seq
1523 aa
AA seq
DB search
MSVKKAKNLAEFLQDLDKLYGCGFYSRLNDEATKRLAAFPAVLASIKCQVGNAAVRNSDV
LQVSAARPKNFKLNLFFTLQSTFSDYKILYFIERILPQLLPQAGEVELFFDLSALALSMQ
DIAEFFRDIYPYLLKKIQNQVSAQAVCILQTAELNIAHDGVHFCIAPEFYSTFSSELLQI
TAKQFKREFSLDVNLHVDCLAANAKETDTVVLQERNKVLQNLLQQSQTADASLALEQAAT
DVDNNASRSKSKAGKWLKVSDPEYIYGNVPAEMNILPLADFNLQSQKVMLKGKIHGFEAN
VVRDGVNMIVKFALFSDDGAVQCFVYGKAEKLQVLTEKLHDDLLVEAYVEASTNRYTSEP
EAKIIGLKQTHETAGRKDEAVKKRVELHCHSQMSAKDGFAEPKSILRLAAEFGHPACAIT
DHGVVQAYPLMYEEKKALAKKGKNIKLIYGMEGYLVDDGNTVVFGLDVPKTKLTSFVAFD
LETTGLKAGEDKIIEIAAIRYKLNESGNFVESDVFATLVNPGGILSPKTTQLTGIESLDL
VGKPDIETVIKDFHSWLGDDPLVAHNGLFDLGFLRYAAFGIVKGTEPRLKFNNLLIDTVE
MARTFYTGLSNYKLDTVANALHITLENHHRALDDTRCCGEIFIKLLQELQVSDLFTLNEK
AGKESTAQIKQRNKTVLHFIALCKDYLGLYNLYRLVSESHVHYFSTRPRIPRSLLRYFKS
GLLIGSSCEAGEVYRSMHKLYRDANKNMVLAKERLSEYHFKQMARFYDYLEIQPLANNSF
FLRDESSGLRDESDLQNVNRLIIALAEKNKKPYVATCDSHFLHPSQQIYRNMLLSVNGFA
DADFSPCLYFRTTEEMLQCFDYLTEEEKENAVINNPNLLAAEVQDNIPPFPEGTFPPEIK
DAARDINDLVWQEVKERYEYEGKIPDLVYNRVKKELDSIISNGFAIMYYISSKLVKKSNA
DGYFVGSRGSVGSSFVATLCGITEVNPLPAHYVCLKCHYSDFSLSDKYDSGFDLPVKNCP
NCQVPMWQDGQNIPFETFLGFNGDKEPDIDLNFSGEYQSRAHNFIKEMFGADYTFRAGTI
SAYQEKNAIGVVKKYAEMHEQVYSTANILRLASGICGVKRTTGQHPGGIVVIPKERDIYD
FTPIQYPADNTDSSMYTTHFDFNSLHDTILKFDCLGHDAPTQLKRLKDFTDVDFLTLPMN
DPQVMSLYKDTSALKLSEPDVQKVGCLGLPEQGTIMARGMIVETKPSSFYDLVQLAGLSH
GTNVWNGNARDLINDGICNIDQVIGCRDSIMTTLINYNLPSKMAFDIMEKVRKGKGLSEE
QIAKMRECQVPEWYIDSCLKIQYLFPKAHAVAYVMSALRIAWYKVYRKEAFYAVWLGNNI
DEFNAELIIGKSLAEIRKSKEYYFTDLNKRNPREKKLFYILEIVEEMMLRGVQLLPIDLY
KSDAKLFLPEGNNVRPPFAVIPKFPQTTAENIVKARKNGEFLAREDLAVKADVKQAAMEA
LANFHVLDNLPEQNQMDLTDLLG
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtaaaaaaagcaaagaacttagctgaatttttacaagatttggataaactgtac
ggttgcggcttttacagtcgccttaatgatgaggcgaccaagcgtttagcggcttttcct
gcagttttggcgagcattaaatgtcaagttggaaatgctgccgttcgcaattccgacgtt
ctgcaagtttctgccgctcggccgaaaaatttcaaattgaatttattttttaccttacaa
agtactttttccgattataagatactttattttatcgagcgtatcttgccgcagcttctg
ccgcaggccggagaagttgaattgttttttgatctgtctgcacttgctttgagtatgcag
gatatagccgaatttttccgcgatatctatccttatctgttgaaaaaaattcaaaatcaa
gtcagcgctcaggctgtttgcattttgcagacggcagagctcaacattgctcatgacggt
gttcatttttgtattgcacccgaattttatagtacttttagcagtgaactgttgcagatt
acagcgaaacagtttaagcgggaattttctttggatgtaaatttgcatgtagattgtctt
gctgcaaatgcgaaagagacggatactgttgtattgcaggaacgcaataaagttttacag
aatcttttacagcaaagccaaactgccgatgcgtctctcgcgcttgagcaagccgctaca
gatgtcgataataacgcttcccgcagtaaaagtaaggccggaaaatggctgaaagtttcc
gaccctgaatacatatacggtaacgtaccggcggaaatgaatattttacctttagcggat
tttaatctacagagtcaaaaagttatgctcaagggtaaaattcacggatttgaggctaac
gttgtgcgtgacggcgttaatatgattgtcaaattcgccctcttttcagatgacggtgct
gtccaatgtttcgtctacggaaaagcggaaaaattgcaggttctgacggaaaaattgcat
gatgatttgttggtggaagcttatgttgaagcttctaccaatcgttatacctccgaaccg
gaagccaaaattatcggtctgaagcaaacacacgaaactgccggccgaaaagatgaggcg
gtgaaaaaaagagtcgagctacattgtcacagtcagatgagtgccaaagacggctttgcc
gaaccgaaatctattttacgtctggctgccgaattcggtcatccggcttgtgccatcacc
gatcacggtgtagtgcaggcttatcctctcatgtatgaagaaaagaaagctttagccaaa
aaggggaaaaatattaagttaatttacggtatggaaggctatcttgttgatgacggtaat
acggtagtcttcggtctggatgttccgaaaactaagctgacatctttcgtagctttcgat
ttggaaacaacaggcttaaaagccggagaagataaaattattgaaattgcagctattcgt
tataaactgaatgaaagcggtaattttgtcgaaagtgacgtttttgcaactttggtcaat
cccggcggtattctcagtcctaagactacccaacttacaggtattgagtccttggattta
gtcggtaaacctgatattgaaacggtaattaaggattttcatagttggttgggcgatgat
cctctggtggcgcataacggcctgtttgatttgggatttttacgctacgcggctttcgga
attgtcaaaggtacggaaccgagacttaaatttaacaatttacttattgatacggtagag
atggctcgcactttttataccggtttaagcaattataaacttgatactgttgccaatgcc
ctgcatataactttggaaaaccatcatcgtgctttggacgatactcgttgttgcggtgaa
attttcattaaattactgcaggaattgcaagtcagtgacttatttacgctgaacgaaaag
gccggaaaagaaagcacagctcaaattaagcagagaaataaaacagttttgcattttatc
gctttatgtaaagattacttgggcttatataacctttatcgtctggtatcggaaagccat
gtgcattatttcagcacgcggccgcgaattccccgctctttattacgttatttcaaaagc
ggtttgctgatcggttcttcctgcgaagcgggcgaagtttatcgcagtatgcataaattg
tatcgcgatgcgaataaaaacatggttttagctaaagaaagattaagtgaatatcacttt
aagcagatggctcgtttctacgattatttagaaatccagccgttggccaataacagtttc
tttttgcgggatgaaagcagcggtttaagagatgaaagcgatttgcaaaatgttaatcgt
ttgattattgctttggcggagaaaaataagaaaccttacgtggctacctgtgacagtcat
ttcctccatccttcgcaacaaatatatcgcaacatgctgctcagcgttaacggttttgct
gatgccgatttttcgccttgcctgtatttccggacaacagaagagatgctgcaatgtttc
gattatttaacagaagaagaaaaggaaaatgctgtaattaacaatcccaatcttttggcc
gccgaagttcaggacaatattccgcctttccccgaaggcacgttcccgccggagattaaa
gatgcggcacgtgatatcaatgatttggtttggcaggaagtcaaagaacgttatgaatat
gagggtaaaattcccgatttagtttataatcgggtgaaaaaagaattggattcaattatt
tccaacggttttgccatcatgtattacatttcgtcaaaattggtaaaaaaatccaatgcc
gacggttattttgtcggttcaagaggttccgtcggttcatcttttgtcgctaccttgtgc
ggtattacggaagttaatcctttgccggcccactatgtttgcttaaaatgtcattacagc
gatttttctttgtctgacaagtatgacagcggtttcgatctgccggtaaaaaattgtcct
aactgtcaagtaccgatgtggcaggacgggcaaaatataccttttgaaacttttttaggc
tttaacggtgataaggaacctgatattgatttgaatttttccggagaatatcagagccga
gcacataactttataaaagaaatgttcggggccgattatactttcagagccggaactatt
tccgcttatcaggaaaaaaatgctatcggtgtggtgaaaaaatatgccgaaatgcatgaa
caggtttattcgacggcgaatatattgcgattagcctccggtatttgcggagttaaacgg
acaacaggacaacatccgggaggtatcgttgttattcccaaagaacgggatatttatgac
tttacgcctattcaatatccggctgataataccgacagctcgatgtatactacgcatttt
gatttcaattctttgcatgatacaattttgaaattcgactgtttgggccatgatgcgccg
acgcaattgaaacgcttaaaagattttaccgatgtcgattttctgacgttaccgatgaac
gatccgcaggtgatgtcactgtataaggatacatccgccttaaaattaagtgagccggat
gtgcagaaagtcggttgcttgggtttgccggaacagggaactattatggcgcgcgggatg
attgttgaaacaaaaccgagttctttttatgatttggtccagttggccggtttgtctcac
ggtacgaatgtttggaacggtaatgcccgggatttgattaatgacggtatatgtaatatc
gatcaggttatcggttgtcgtgattcaattatgacaactcttatcaattataatctgccg
tccaaaatggccttcgatatcatggaaaaagtacgtaaaggcaagggcttgagtgaggaa
cagatagccaaaatgcgggaatgtcaggtccctgaatggtacatagattcctgcttaaaa
attcaataccttttcccgaaagcgcacgccgttgcttatgtcatgtcggctttgcgtatt
gcctggtataaagtttatcggaaagaagccttttatgcggtttggttgggaaataatatt
gacgaattcaatgccgagttgattatcggcaaaagtttggctgaaattcgcaaaagtaaa
gagtattattttacggacttaaacaaacgtaatccgcgcgaaaagaagctcttctatatt
ttagaaattgtagaagaaatgatgttgcgcggcgtgcaattacttccgattgatttatat
aagtcggatgccaaactctttttgcctgaaggtaacaatgtccggccgccttttgccgtc
ataccgaaatttccgcaaacgacagcggaaaatattgttaaagctcggaaaaacggcgaa
tttttagccagagaagatttggctgttaaagcggatgtcaaacaggcggcaatggaagct
ttagctaattttcatgttctggataatttgccggaacagaatcaaatggatttaacagat
ttactgggttaa
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