Amygdalobacter indicium: PYS61_05700
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Entry
PYS61_05700 CDS
T09413
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
aim
Amygdalobacter indicium
Pathway
aim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYS61_05700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aim03019
]
PYS61_05700
03016 Transfer RNA biogenesis [BR:
aim03016
]
PYS61_05700
Enzymes [BR:
aim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PYS61_05700
Messenger RNA biogenesis [BR:
aim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PYS61_05700
Transfer RNA biogenesis [BR:
aim03016
]
Prokaryotic type
tRNA degradation factors
PYS61_05700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
Mug135_C
SPATA25
S1_RRP5
OB_RRP5_4th
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
WEG35422
UniProt:
A0ABY8C4B1
LinkDB
All DBs
Position
complement(1354453..1356756)
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AA seq
767 aa
AA seq
DB search
MKREFSFDLCGRKLIIETGHLAPLANGACLVRYGDTVVLSTATSSKEPRPGVDFFPLSVD
YEEKMYAMGKFPGGFMKREGRPSENAILTSRAIDRPLRPLFPKDLRNDVHVNNLVMSVDQ
DNEPELAAMLGSSIAVAISDIPWDGPTAAVALGLVDGKVVINPDTRQREASDMYVTLAGT
EDKVCMIEAGANEVPDDVMLDAISQGHKVISQICRFIKSIAAEIGLPKYTYTSSAVPQEV
LDECRALVGEELKQCVLTTDKTERDNNVDALAQKIKEHYADREELAALSTEIMYNLEKEV
VRSYLYNDEKRVDGRDFFTIRPLSCGIDLLPRVHGSAWFQRGQTQVVTVCTLASLANAQA
VDNLSTETEKRYIHQYNFPGYSTGEAKASRSPGRREIGHGALAERALLAVLPSKEEFPYA
IRNVSEVTSSNGSTSQGSVCASTLALMAAGVPISRPVAGISCGLITAKDNIDDYKVFMDI
QGIEDFFGDMDFKVAGTTEGITAIQVDIKVKGLTLDIIRDAFAMTRKGRLQIINDVILPC
IPAPRTELSPWAPKIFQTEIPADKIGEVVGKSGKTINRIISLTNSTIDIDEEGHVYVSCI
DSEMGKKAIKIIEGIVREPEVGETYEGTVTRLMSFGAFVEYLPGKEGMVHISKVAPERVE
NIEDVLHVGDSVKVKIIEVDDQGRVNLSIKDCLPGATASPLRTERRGRSDRFERNSERSF
ERNSGNYEKNNYRKSNSSAYTQHKENHTSFNQFEAKPRKRKFDRDEE
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaagagaattttcgtttgacctgtgcggtcgtaaattgattattgagaccggccat
ttagcacctttagctaatggcgcctgtttagtaagatatggtgatactgttgttttatca
acagcaacttcttcgaaagagccgcgtcccggcgtggatttttttcctttaagtgttgat
tatgaagagaagatgtacgctatgggtaaattcccgggcggttttatgaaaagagaaggc
agaccttcagaaaatgccattttaacatccagagctattgatcgtcctttgcgtccttta
tttcctaaagatttacgcaatgatgtccatgttaataacttggttatgtcagttgatcag
gataatgaaccggaattggctgctatgctcggttcctctattgccgtagctatttcagat
attccttgggacggcccgacagctgcggtcgctttaggcttggttgacggtaaagttgtt
attaatcccgatacacgtcaacgtgaagcttccgatatgtatgtaactttggccggtacg
gaagataaggtttgtatgattgaagccggtgccaatgaggtaccggatgatgtaatgctt
gatgctatcagtcaaggacataaagttatcagtcaaatttgccgttttattaagagtata
gcggcagaaataggattgcccaaatatacttatacttcaagtgctgtaccgcaggaagtt
ctggacgaatgtcgagctttggtcggggaggaattgaagcagtgcgttttaacaaccgat
aaaactgagcgcgacaataatgttgatgctttggctcaaaaaattaaagaacactatgcc
gatagagaagagctggcagccttaagtactgaaattatgtacaatctggagaaagaagtc
gtacgcagttatttatacaatgacgaaaaaagagttgacggacgtgatttcttcactatc
agacctttaagttgcggtattgatttattacctcgtgtacacggatcggcgtggttccaa
cgcggacagacacaagttgttactgtatgtacactggcgtctttggctaacgctcaagca
gttgataatttatcgaccgagactgagaaacgttatatccaccaatataatttcccggga
tacagtacgggtgaggcaaaggcttcaagatctccgggacggagagaaatcggtcacggt
gctttggctgaaagagctttattagctgttttgccgagtaaagaagagttcccttatgcc
ataagaaacgtatcggaagttacttccagtaacggttctacttctcaaggttcagtttgt
gcttcaactttggctttgatggcagccggtgttcctatcagccgcccggtagcaggtatt
tcctgcggcttgattacagctaaagataatattgacgactataaagtatttatggatatt
caaggaattgaagacttcttcggcgatatggatttcaaagttgccggtacaacagaaggt
attactgctattcaggttgatattaaagttaagggcctgacgttggatattatcagagat
gcctttgctatgacgagaaaaggtcgtttgcagattattaatgatgtgatcttaccttgt
attccggctccgagaaccgagttgtctccttgggcacctaagattttccagactgaaatt
ccggcagataaaatcggtgaagttgtcggtaaatccggtaaaactattaatagaattatc
agccttaccaattcaacgattgacattgatgaagaaggccatgtatatgtttcgtgcata
gatagtgagatgggtaaaaaggccattaagattatcgaagggattgtacgggaaccggaa
gtcggtgaaacttatgaaggtacagtaacacgtttgatgtcgttcggcgcctttgtcgag
tatttgccgggaaaagaaggtatggtacatatttccaaggttgcaccggagcgcgtggaa
aatattgaggatgtgttgcatgtcggtgacagtgttaaggtaaagattatcgaagttgat
gatcagggacgggttaatttgtcaattaaagactgcctgccgggagcgacagcttcgcct
ttaagaacggaaagaagaggccgttcggatcgctttgagcgcaattccgagcgtagtttt
gaacgtaattccggaaattacgaaaagaataattatcgcaagagcaattcttccgcttat
acacaacacaaagaaaatcatacatcctttaatcaatttgaagcaaagccgagaaaacgt
aaatttgatcgggatgaagagtaa
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