Actinobacillus indolicus: EXH44_07235
Help
Entry
EXH44_07235 CDS
T05940
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aio
Actinobacillus indolicus
Pathway
aio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXH44_07235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aio03019
]
EXH44_07235
03009 Ribosome biogenesis [BR:
aio03009
]
EXH44_07235
Enzymes [BR:
aio01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EXH44_07235
Messenger RNA biogenesis [BR:
aio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EXH44_07235
Ribosome biogenesis [BR:
aio03009
]
Prokaryotic type
rRNA processing factors
EXH44_07235
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
TMEM106_N
KH_11
Motif
Other DBs
NCBI-ProteinID:
QBQ64757
UniProt:
A0A4P7CMW1
LinkDB
All DBs
Position
1451398..1454322
Genome browser
AA seq
974 aa
AA seq
DB search
MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE
RHGFLPLKEISREYFPEGYVFQGRPNIKDIIQEGAEVIVQVSKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWD
LKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNRKVFEKAKNH
IRLVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDI
NSSRATRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIR
EATRQDRARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKIRDNESIALSIL
RLLEEEAIKENSVQVHAIVPVEIASYLLNEKRKAISDIEKRHDVQVIVVPTESMETPHFS
VYRLRENEIVPTLSYDLAKRYQEQDEENHVHHHHSEEALVSRNEPVITVESVLQSSELNL
QPAPTPVEPAKPSLISRIIAKIKAMFASEEKEPEKKQGKGKTRNQRERRQQRRERPNRNE
RQERKATTVEATKDVVAAQAEPKKRREIVEEVVQQPAEQRQVVQRETKVAERRQRRDLRK
KVRVDSTDNPSEVTASLVASEDVSANSFASEAVITPVTENVIENTDMIEERGESRESRQR
RLPRHLRVGNQRRRERKEVKAAMPLTSAVASPELASGKIWVKFSETPKVATEEKPRFLSV
DEILQQQEQPVVEQEESAQAVNVENKESTVPFGYFVKQEADRDLVKDNHKRRPKAENAID
EVDEKAVALSAKPFGLVVSQSTDRDLVKENHERKKSAHVTTKMSEESETEIQVEQPTEVY
QSQYQFVGKLGTFSRVQHTQSTMTVASAPVEEIEIIQVKEWQNSKYYFYGKGFGGHSSAV
SHVYSAPRVAKTTA
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcaatgcaactcaaaaagaagagttgcgtgttgcccttgttgatgggcagcga
ctgttcgacttggatattgaaagtccaggacacgaacaaaagaaagcgaatatctacaaa
ggtaaaattacccgtgttgaacctagtcttgaagcggcattcgttgattacggtgcagag
cgtcacggtttccttccgttaaaagagatttctcgtgaatacttccctgaaggctatgtg
ttccaagggcgcccaaacattaaagatattattcaagaaggggcggaagttattgttcaa
gtcagcaaggaagagcgtggtaataaaggggcggctttgacgacctttatctctttggcg
ggtagctatcttgttttaatgccaaataatccccgagccggcggtatttctcgtcgtatt
gaaggggacgaacgtttagagctgaaagaagcgttagattgcttagatgtgcctgaagat
gtcggtttaattgtgcgtactgctggggtgggtaaatcccctgaagagttgcaatgggac
ttaaaagtcttgttacatcattgggaagcaatcaaaaaagcggcagagtctcgcccagca
cccttcttaattcatcaggaaagtgatgtgattgtgcgtgcgatccgtgattatcttcgc
cgtgatattggtgagattttgatcgacaaccgcaaggtatttgagaaagcgaaaaatcat
atccgtcttgtccgtcctgattttatcaaccgtgttcgcctatatgaaggtgaagtaccg
ttgttcagtcactatcaaatcgagtcgcaaattgaatcagcattccaacgtgaagtgcgt
ttgccatcaggcggttctattgtaattgatgtaactgaagcattgacggctatcgacatc
aactcgtcccgtgcaactcgtggtggcgatattgaagaaaccgcattaaataccaacttg
gaggcggcagacgaaattgctcgtcagttacgtttacgtgacttgggcggtttaatcgtg
atcgactttattgatatgaccccagttcgtcatcagcgtgaagtggaaaaccgtatccgt
gaagcaacacgtcaagaccgtgcaagaatccagtttggacgtatttctcgtttcggcttg
ctcgaaatgagccgtcagcgtttaagtccgtcgttaagcgaagcgtcgtcacacgtttgt
ccacgctgtcaaggtactggaaaaattcgtgataacgagtcgattgcactctccattttg
cgtctgttagaagaagaagcgattaaagaaaactcagtacaggttcacgctatcgtgcct
gtagaaattgcttcgtacctattaaatgaaaaacgtaaggcgattagtgacattgaaaaa
cgtcacgatgttcaagtgattgtggtaccaaccgaaagtatggaaaccccacactttagt
gtgtatcgcctgcgtgagaacgagatcgttccaaccttaagctacgatttagcgaaacgc
taccaagaacaagatgaagaaaatcacgttcatcatcaccattcagaagaagcgttggtc
agccgtaatgagccagtgattaccgttgaatcagtattacaaagctcagagttaaatcta
cagcctgcaccaacgccagtcgagcctgcaaaaccttcgttaatcagtcgaatcattgcg
aaaatcaaagcaatgtttgcaagcgaagagaaagaacctgagaagaaacaaggtaaaggc
aaaacccgcaatcagcgtgaacgtcgccaacaacgccgtgaacgcccgaatcgcaatgaa
cgccaagaacgtaaggcaacgacggtagaggcgacaaaagatgttgtagctgctcaagct
gagccgaaaaaacgccgtgagattgttgaagaagtcgtgcaacaacctgcagagcaacgc
caagtcgtacagcgtgaaactaaagtagcggaacgccgccaacgtcgtgatttacgcaaa
aaagtgcgtgttgattctactgataatccatcagaagtgaccgcgtctttagtagcatca
gaagatgttagtgcaaactcattcgcaagcgaggctgttattacaccagttactgaaaat
gtaattgaaaacacagatatgattgaagaacgtggcgaatcacgagagtctcgccaacgt
cgcttacctcgtcatttacgtgtaggcaatcaacgtcgccgtgagcgaaaagaagtcaaa
gctgcaatgccattaacatctgcggtcgcatcacctgagcttgcaagcggtaagatttgg
gtgaaatttagcgaaacgccaaaagtagcaacagaagaaaaaccacgtttcttgtccgtt
gatgaaatcctacaacaacaagagcaacctgttgttgaacaagaggaatcagcacaagcg
gttaatgttgaaaataaagaatctactgttcctttcggttattttgttaaacaagaagct
gaccgcgatttagtgaaagacaaccataaacgccgtcctaaagcagaaaatgccattgac
gaagtggatgaaaaagccgttgcattgtccgcaaaaccttttggactcgttgtatcacaa
tcaacagatcgtgatttggttaaagagaatcatgaacgcaaaaaatctgctcatgtaaca
acaaaaatgtctgaagagagtgaaacagaaatccaagtagaacaacctactgaggtatat
caaagccagtatcagtttgttggaaaattagggactttttctcgcgtacaacacactcaa
tcaacaatgactgtagcgagcgcaccagtagaagagattgaaatcattcaagtcaaagag
tggcaaaactctaaatattatttctatggtaaaggctttggtggacatagtagcgcagta
agccatgtttactctgctcctcgtgttgctaaaacaactgcttaa
DBGET
integrated database retrieval system
