KEGG   Arachis ipaensis: 107604804
Entry
107604804         CDS       T04301                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
aip  Arachis ipaensis
Pathway
aip03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aip00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107604804
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:aip03041]
    107604804
Spliceosome [BR:aip03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    107604804
 Complex C
   U5 SnRNP specific factors
    107604804
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I WDR55 WD40_WDHD1_1st WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 NBCH_WD40 Beta-prop_SPT8 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 eIF2A Beta-prop_RIG_1st Beta-prop_WDR75_2nd Beta-prop_DCAF12 Beta-prop_Nup120_160 Beta-prop_NWD2_C Nbas_N
Other DBs
NCBI-GeneID: 107604804
NCBI-ProteinID: XP_016161986
LinkDB
Position
B06:complement(108744082..108752894)
AA seq 345 aa
MQGFPSEGENALSVVGPKPMEWSTVPYSGPQVPGPNGKKRTSSLESPIMLLTGHQSAIYT
MKFNPSGSVIASGSHDREIFLWNTYGECKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDK
TLRAWDVETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFP
DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVIMTLQGHQDMITGMQLSPDGSYLL
TNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCNWSSDGSKVTAGSSDRMVYI
WDTTSRRILYKLPGHNGSVNECVFHPNEPIIGSCSSDKQIYLGEI
NT seq 1038 nt   +upstreamnt  +downstreamnt
atgcaaggcttcccttctgaaggtgaaaatgctttgtcagttgttggtccaaagccaatg
gaatggtctactgttccatacagtggtcctcaagttcctggaccaaatggaaagaagcgg
acatcaagtttggaatcgccaatcatgttgctgacaggtcaccagagtgctatctatacc
atgaagttcaatccatcaggatcagtcattgcgtctggatctcacgacagagagattttc
ctctggaatacgtatggggaatgcaagaactttatggttctaaagggtcacaaaaatgca
gttttagaccttcattggactacagatggaactcagatagtttctgccagccctgataaa
actctgagggcttgggatgtggaaacaggaaaacaaattaaaaagatggtagagcatctt
tcatatgtcaattcatgttgtccttcgcggaggggtccgcctcttgttgtcagcggatca
gacgatggaactgctaaactatgggatatgcgtcaaaggggttccatccaaacattccca
gataaataccagattacagctgttagcttctccgatgcatcagataagatctataccggt
ggtattgataatgatgtcaaggtatgggatttgcgtaagggtgaagttatcatgacactt
caaggtcatcaagatatgattactggcatgcagttgagtcctgatggttcttaccttcta
actaatggcatggattgcaagctctgcatttgggatatgcgcccatacgccccccaaaat
cgctgtgtaaaggtgttggaagggcaccaacacaactttgaaaagaacttgttgaagtgc
aattggtcatccgatggaagcaaggtcacagcagggagttcggatcgaatggtttatata
tgggataccacgtcgcgacgcatcttatataagcttcctgggcacaatggatctgttaat
gagtgtgtgtttcaccccaacgaacctattattggatcttgcagtagcgacaagcagatc
tatcttggagagatatga

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