Arachis ipaensis: 107604938
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Entry
107604938 CDS
T04301
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
aip
Arachis ipaensis
Pathway
aip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107604938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aip03019
]
107604938
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107604938
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107604938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
107604938
NCBI-ProteinID:
XP_016162142
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All DBs
Position
B06:complement(112767442..112775453)
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AA seq
891 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKNRPPRLTHLETSITRHKA
HIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVET
LEDLVTIPPGLSKATPSLSLKNTLAVSASQSASASASQTSEQADDTASQDSNSDIGARTP
PAKVSGIISATSTPAGNHATPLSVNVSTHNLSSAPAAGSVLSGSNSVRSPMENANAANSP
SANQSSSLKEEEINSFPDQRPSPSLSDAALRSIGRNNISNQAAASIPLGAGNMVSNNGTL
GSVPSASEITKRNMLAADDRLGGSSGMVQPLVSPLSNSRLILPQVGKANEAASADSNVIN
EAAAVSSRVFSPSVVPGMQWRPGSPFQNQSDAIRQRTEIAPDQREKFLQKYQQVQQQGHS
TLLTMPSLGGNPKQFSAQQQNPLLQQFNSQGSSVSSQSAIGLGVQSPGFSGISTTTLQQP
PNSVHSPSSQQSLMSGVSKDADVGNSKIEDPQHQNFPDDSAVESTGSTGVGKSLISEDDL
KSTFAADSPAGVSVSLAETGQTSRDIDLSPGQPLQPNQPTGNLGVIGRRNGMDLGAIGDS
FTGSSSSINPSGVRDQLYNLQMLEAAHYKLPLPRDSERPRAYTPRHPTITPSSYPQTQAP
IVNNPAFWERVGLEPFGTDTLFYAFYYQQNTYQQYLAAKELKKQSWRYHKKYNTWFQRHE
EPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELLV
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcggaagcttcagggagagatcgatcgcgttctcaagaaagtccaggaa
ggtgttgaagtctttgatagtatctggaacaaggtttacgacacagataatgccaaccag
aaggagaagtttgaagcagacctcaagaaggagattaagaagcttcagaggtacagggac
caaattaagacttggattcagtccagcgaaatcaaggacaagaaggttagtgcatcttat
gagcaagctctagtggatgcccgcaagttaattgaacgtgaaatggaaaggtttaagata
tgtgaaaaggagacaaagaccaaagcattctctaaggaaggcttaggtcaacagcctaag
actgatccaaaagagaaggctaaatcagagacaagggattggttgaacaatgtggttggg
gagttagaatctcagattgacaactttgaagctgagcttgaagggctttctgtcaagaaa
ggaaagaacaggccacctagattgacacatctagagacatcaattactcggcacaaggct
catataaagaaatgtgaatttatcttgaggctattagacaatgatgagttaagtccggag
caggttaatgatgtcaaggatttcttggatgattatgtagagcgtaatcaggaggacttt
gatgaattcagcgatgttgatgaactatacagctcattgcctttagataaggtggagact
cttgaagatcttgttacaatcccccctggcctatctaaggctactcctagtctcagcttg
aagaatactttggctgtttcagcatcacaatcagcatcagcatctgcctcacaaacatct
gagcaagctgatgacacagcatcccaggatagcaattctgatattggtgcaagaactcca
cctgcgaaagttagtggaattatttctgctacttccacaccagctggcaaccatgctact
cctctttctgtgaatgtttctacgcataatttgtccagtgcaccagctgctggatcggtc
ctttctggttcgaattcagttcggagtcccatggagaatgctaatgctgcgaattcacct
tctgcgaatcaatcttcctctttgaaggaagaagagattaatagtttccctgaccagaga
ccatccccatcgctttctgatgcagcactaaggagcattggccgaaacaacatttcaaat
caagcagcagctagcatccctcttggtgctgggaacatggtttctaacaatggaaccctt
ggttcagtcccttcagcctctgaaataactaagaggaacatgttggcagctgatgataga
cttggtggaagtagtgggatggtgcagcctcttgtatccccattaagtaatagcagattg
atcttgcctcaggttgggaaggctaatgaagctgcctcagctgactctaatgtcattaat
gaggctgcagctgtatctagtagagttttttccccatctgtggttcctggcatgcaatgg
agacctggaagtccattccagaaccaaagtgatgcgattcgtcaaagaactgaaatagct
ccagatcaaagggaaaagtttttgcagaagtatcagcaagtgcagcagcaggggcacagc
accctgcttactatgccttctcttggaggaaatcctaagcagttttctgcccagcagcaa
aatccacttttgcaacagtttaactcccaaggttcctctgtttcttctcaatctgctatt
ggccttggagtccagtcaccaggttttagtggtatttcaactactacactacaacagcca
cccaattcggtccattccccatctagtcaacagtcattgatgtcaggtgtttccaaagat
gcagatgttggcaattctaaaattgaagatccacaacatcagaattttcctgatgattca
gctgttgaatctactggtagtactggggttggcaagagtctcataagtgaagatgatttg
aaatcaacatttgctgcagattctccagcaggggtatccgtctcccttgcagaaactggt
caaacatccagagatattgatttgtctcctggccaacctttacaacccaatcaacctact
ggtaaccttggtgtcattgggagaagaaatggcatggatcttggagccattggtgatagt
ttcacgggatcaagttcaagtattaatccaagtggagtgcgtgatcagttatacaatttg
caaatgcttgaggcagcacactacaaacttcctctacccagagactcagaacgtcctaga
gcttatactcctaggcacccaacgataacaccttctagttatcctcagacacaggctcct
attgttaataatcctgctttttgggagagagtaggtcttgaaccatttggcactgataca
ttgttctatgcattttattatcaacagaacacttaccagcagtatttggctgcaaaggaa
ctaaagaaacagtcctggagataccacaaaaagtataacacatggtttcagcgtcatgaa
gagcccaaagttgctacagatgaatatgagcaaggaacatatgtgtacttcgatttccat
attgcaaatgatgaccttcaacatgggtggtgtcaaagaatcaaaactgaattcactttt
gaatataattatcttgaagacgagcttcttgtatag
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