Arachis ipaensis: 107608972
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Entry
107608972 CDS
T04301
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
aip
Arachis ipaensis
Pathway
aip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107608972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aip03041
]
107608972
03009 Ribosome biogenesis [BR:
aip03009
]
107608972
Enzymes [BR:
aip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107608972
Spliceosome [BR:
aip03041
]
Complex A
U2 snRNP components
U2 related factors
107608972
Complex B
107608972
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
107608972
Ribosome biogenesis [BR:
aip03009
]
Eukaryotic type
90S particles
Helicases
107608972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
SRP54
AAA_7
T2SSE
FtsK_SpoIIIE
AAA_30
AAA_33
TsaE
PhoH
AAA_29
Motif
Other DBs
NCBI-GeneID:
107608972
NCBI-ProteinID:
XP_016166264
LinkDB
All DBs
Position
B07:36575923..36580228
Genome browser
AA seq
725 aa
AA seq
DB search
MGTERKRKVSLFDVVDDGAVKMAKPNGGAANAVGGNSLINRWNGRAYSQRYYEILEKRKT
LPVWHQKEEFLQALKNNQTLILVGETGSGKTTQIPQFVLEAVDIESPDKRRKMMVACTQP
RRVAAMSVSRRVAEEMDVNIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMADPLLER
YKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFNGAPLMKVP
GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEVS
NMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPVNEGGPPGRKIVVSTNIAETSLTIDGI
VYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFHND
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDG
NLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEA
KARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKAADNVRQQLVRIMARFNL
KLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEFVLTSRNFIRTVTDIRGEWLVDVAPHYYDLSNFPQCEAKRVLERLYKKREKERDE
ARSRK
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtgagcctgttcgacgtggttgatgacggtgccgtt
aagatggcgaagccgaacggcggcgccgccaacgccgtcggaggaaacagcctcataaac
cggtggaatgggagggcttattcgcagaggtactatgagatcttggagaagaggaagacg
cttccagtatggcaccagaaggaggaattcctgcaggcgttgaagaataatcagacactc
atcctcgttggtgaaactggcagtggtaaaaccacccagatcccccagtttgttttggag
gctgttgatatagaaagccctgataaacgcagaaagatgatggttgcatgcacacagcca
cgtagggtggctgcaatgtctgtctcccggcgtgtggcggaagagatggatgtgaatatt
ggagaagaggttggttacagcatcagattcgaagattgcagtagcgcaagaaccgttttg
aagtatctcacagatggtatgcttctgagggaggcaatggctgatccacttttggaacga
tataaagtaattgttcttgatgaagcacacgaaagaactttggccacagatgtgctattt
ggccttctaaaggaagtgcttaaaaatagacctgacttgaagttggtcgtgatgagtgcg
actcttgaagctgaaaagtttcagggatattttaatggcgctccacttatgaaagttcct
ggaaggttacatccagtggagattttctatacccaggaacctgaaagggactacttggag
gctgctattaggacggtggtgcagatacacatgtgtgaacctcctggagatatacttgtc
ttccttaccggtgaggaagaaatagaggatgcatgccgcaaaattacgaaagaagtttca
aatatgggagatcaggtaggccctgtgaaagtggttccactgtattctactcttccgcca
gcaatgcagcagaagatttttgagccagctcctcctccagtaaatgagggtggaccccct
ggaaggaagattgtggtgtcaacaaacatagctgaaacatcactaacaatagatggtata
gtctatgtcattgaccctggctttgctaagcagaaggtttataaccctcgcatccgtgtt
gagtctctcttggtatctccaatatcaaaggctagtgcacaccagaggtctgggcgtgct
ggaagaactcaaccagggaaatgttttagactttatactgagaaaagtttccataatgat
cttcagccacaaacgtatcctgaaattttgagatcgaatcttgccaacacagttctcacc
ttgaagaaacttggcatagatgatttagtgcattttgatttcatggaccctcctgcccca
gagaccttaatgcgggcattggaagtgttaaattacttgggtgcactggatgatgatggt
aacttaacaaagctgggtgagattatgagtgaatttcctttggacccacagatgtcaaag
atgctcgttgtcagtccagaattcaactgttcaaatgagatactttcagtttctgccatg
ctatcagtacccaattgctttgtccggcctagagaggcacagaaagctgctgatgaagcg
aaagctagatttgggcacattgatggagatcatctcacgctattgaatgtatatcatgcc
tacaaacaaaacaatgaggatccttcatggtgctatgataatttcgttaatcatagggca
ctgaaagcagccgacaacgttagacaacagctagtccgtatcatggccaggtttaacctg
aagttatgcagcactgatttcaatagtcgggactactacgtcaacatcagaaaggctatg
ctggcgggatattttatgcaggtagctcatctggagcgaactggacactacttgactgtg
aaagacaaccaggtggttcacttgcacccatcaaattgtctggatcacaaacctgaatgg
gtcatctataatgagtttgttcttacaagtcggaattttattagaactgttacagacata
cgtggtgaatggttagttgatgtagctccacattattatgatttgtcaaattttcctcaa
tgcgaagcgaagcgtgttcttgagaggctttacaagaaacgagagaaagaaagagatgaa
gccaggagtaggaaatga
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