Arachis ipaensis: 107612498
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Entry
107612498 CDS
T04301
Name
(RefSeq) uncharacterized protein LOC107612498 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
aip
Arachis ipaensis
Pathway
aip03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107612498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aip03021
]
107612498
03019 Messenger RNA biogenesis [BR:
aip03019
]
107612498
Transcription machinery [BR:
aip03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107612498
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107612498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
107612498
NCBI-ProteinID:
XP_016169674
LinkDB
All DBs
Position
B08:88383820..88389448
Genome browser
AA seq
592 aa
AA seq
DB search
MSAPNHQIPLQNNGMGMQNQPQMGAANQLNQNLMPPYVSNMQPSMNTHQFMNAANHLLPL
QNNQLHMSNMGMSVPPQGPSHAGFGPQNGVSNAGYNPMFQAQGQVMHNAAQINLSQFQGH
ILAQSILSMLQQPNMNMNIPNGQFSSQFPVQNMNQQLPMQVPNPSQVGLHGVHPGSGPMF
GFPGQVPQAMVSQNPMFSSMLHTGLVQGNQVRPQFDQNEKSLVLPNGNTNAFVSSSFSSM
QLQGNSSASHAQTNANSNTKSNDRNSSWKGSQSKNFKNKQTRGGFQGRFQKCKFPKEHRD
KGPNNGRIEHQQKPKFSLNPKEQQQEPKRPFFVTYTDQEIRQWREARRKNHPFNNIQKKQ
SEHTRSPKVDRVVLQRELKQVLAKQAELGVEVAEIPSYYLKDRENQGPQSEGKDTLNNKK
RKFQNKFNRKPDRKDRFSKKQKFTDKDSLEQRPSITKKKPTLLQKLLSADIKKDKSHLIQ
AFRFMVTNSFFKYYPDKPLIYPSVVVKETGSEGNAGEKHLHAGKDVLDHDNKKTVKKIVN
DDINDVHFIEEEESDDDDYENLQKEPSSLVQRQRDNGIGIEKCDEEEGEIID
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctcctaaccatcaaattccattgcaaaacaatggcatggggatgcagaaccag
cctcaaatgggtgcagccaaccaactaaaccaaaacttgatgccaccctatgtgtcaaac
atgcaaccatcgatgaacacacaccaattcatgaatgctgctaatcatctccttccattg
caaaataaccagttgcatatgtctaatatgggtatgagtgttcctccgcagggtccatcc
catgcaggatttggtccccaaaatggtgtgagcaatgctggttacaatccaatgtttcag
gctcaaggacaagtcatgcacaatgctgctcaaatcaatttgtctcaattccaggggcat
attctagcacaaagtattctgagcatgcttcagcagcctaatatgaatatgaatatacct
aatggtcaattttcttctcagtttcctgtgcaaaatatgaatcagcagttacctatgcaa
gtgccgaatccttctcaagttggtctgcatggtgtgcatcctggttctggccccatgttt
ggctttccaggtcaagtgcctcaggccatggtttctcaaaatccaatgttttcttcaatg
ctgcatacgggtctagtgcaaggaaatcaggtcaggccacagtttgaccagaatgagaaa
agcctggttctaccaaatgggaacacaaatgcctttgtctcatcatctttttcatctatg
cagttgcaggggaatagttctgcatcacatgcacaaacaaatgcgaatagcaataccaaa
agtaacgatcgaaattctagctggaaaggatcacaaagcaaaaacttcaaaaataaacaa
actcgaggggggtttcaaggaagattccagaagtgtaagtttcctaaagaacatagggac
aaagggccaaacaatggaagaattgaacatcagcagaaaccaaaattcagtttgaatcct
aaggaacaacagcaggaaccaaaaagaccattcttcgtaacttacactgaccaagaaatc
cgacaatggcgggaagctcggaggaagaatcatcctttcaacaacatccagaagaaacag
agcgagcatacgagaagccccaaggtggatagggttgtcttacaaagagagctcaagcag
gttttagctaagcaagctgagttgggagttgaagttgctgaaataccatcctactatctg
aaggatcgtgaaaatcaaggtcctcagagtgaaggaaaagacacacttaacaacaaaaag
aggaaattccagaacaagttcaacaggaaacctgacagaaaagatcggttctccaagaaa
cagaagtttacagacaaagattctttagaacaacgaccttctataaccaagaagaagcca
actttattgcagaaactcctgagtgctgatataaagaaggataagagtcacctgattcag
gctttcaggttcatggtaacaaattccttctttaaatactatccagataagccactgata
tatccatcagtggtggttaaagaaaccgggtctgaaggcaatgcgggagaaaaacatttg
cacgctggaaaagatgttcttgaccatgataacaagaaaacggttaaaaaaattgtaaat
gacgacattaatgatgtccatttcattgaagaggaagagagtgatgatgatgattatgaa
aatctgcaaaaagaaccatcttccttggttcaaagacaacgtgataatggaataggcatt
gagaaatgtgacgaagaagagggagaaatcattgattga
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