Arachis ipaensis: 107612824
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Entry
107612824 CDS
T04301
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
aip
Arachis ipaensis
Pathway
aip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107612824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aip03041
]
107612824
Enzymes [BR:
aip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107612824
Spliceosome [BR:
aip03041
]
Complex C
Other components
Step II factors
107612824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
Flavi_DEAD
AAA_30
AAA_24
nSTAND3
AAA_16
T2SSE
TMEM247
ABC_tran
ATPase
ResIII
Motif
Other DBs
NCBI-GeneID:
107612824
NCBI-ProteinID:
XP_016170061
LinkDB
All DBs
Position
B08:complement(2018156..2028843)
Genome browser
AA seq
1307 aa
AA seq
DB search
MEKNGVVDIDKTTETMEPEKSTGGGLYVPGKDRVVYVPQERKSRLGLDALAIAKREGSQN
DGVFKVPKARTISIAASAEDEDKSESTVIEDESGLGGTASKDRRANTRYRKSTNESSQAE
SSVTEDHDADSHGTRSKEHRGSDVPASPSGYERENYRNERRHHRDESRSGSRRVQHVDNF
ESKEPYFERDSRSRYGHEYNRNREHYSERDSRSRYDHERGRSKEPYSERDSRSRYDHEYG
RKRSRYEGSRRTPGRSDWDDGQWEWEDTPRRDSVSSSRHHQPSPSPMFLGASPDTRLVSP
WSGGNTPYSSSPWDHVSPSPVPIRASGSSVKSSTSRHSGRSHQLTFSSGASSSYEDEVTD
KSEFGEEHKYEITESMRAEMEYDADRAWYDREEGSTMFDGGDNSSLFLGDEATFQKKEAE
LAKRLTRRDGTKMSLAQSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEEERKVI
LLVHDTKPPFLDGRVVFTKQAEPIMPIKDPTSDMAIISRKGSTLVREIREKQSSNKSRQR
FWELAGSKLGDILGVEKTAEQIDADTATVGEQGEIDFKEEAKFSQHLKKEEAVSDFAKSK
SIAEQRQYLPIFSVRDDLLQVIRENQIVVVVGETGSGKTTQLTQYLHEDGYTIKGIVGCT
QPRRVAAMSVAKRVSEEMETELGEKVGYAIRFEDVTGPNTIIKYMTDGVLLRETLKDSDL
DKYRVIVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSHFFGSVPIYN
IPGRTFPVTTLWSKTPVEDYVEGAVKQAMTIHITSPPGDILIFMTGQDEIEAACYALAER
MEQMVSSSKKAVPKLLILPIYSQLXXXXQAKIFQRAEDGARKCIVATNIAETSLTVDGIF
YVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEM
LPSPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGA
LTDLGWKMVEFPLDPPLAKMLLMGEQLGCLEEVLTIVSMLSVPSVFFRPKDRVEESDAAR
ERFFVPESDHLTLYNVYQQWKQHDYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIS
LTTCWPDTDIVRKAICSAYFHNAARLKGVGEYVNCRTGMPCHLHPSSALYGMGATPEYVV
YHELILTTKEYMQCATAVEPQWLAELGPMFFSVKESDTSLLEHKKKQKQEKTAMEEEMEN
LKKMQAEIERKQKQEEKEKLAKQQQQVSMPGLKKGSSTYLRPKKLGL
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaaatggagttgttgacattgataagaccacggagaccatggaaccggagaag
tccactggtggtggactttatgttcccggcaaggacagagtggtgtacgtgcctcaagaa
agaaaatctcgtttaggactagatgcccttgcaattgcaaaacgtgaaggatctcaaaat
gatggagtgttcaaggtcccgaaagcaaggaccatttccattgcagcatctgcagaggat
gaagataaatctgagtctactgtcattgaggatgaaagcgggctaggtggaactgctagt
aaagacagacgagctaatacgagataccggaaatcaaccaatgaatcatcacaagcagaa
agttctgtgactgaagatcatgatgctgattcacatgggactcgttcaaaggagcatcgg
ggttcagatgtccctgcttcaccttctggatatgaaagggagaattataggaatgagagg
aggcatcacagagatgagtcaagaagtggtagcagaagagtgcaacatgtagacaatttt
gaaagtaaggagccttattttgagagggattcacgtagtaggtatggccatgaatacaac
aggaatagggagcattattctgagagggattcacgtagtagatatgaccatgagcgcggt
agaagtaaggagccttattcagaaagggattcccgtagtaggtatgaccatgaatatggt
agaaagcgaagcagatatgagggttccaggagaacacctggcaggtctgactgggatgat
gggcaatgggaatgggaagatactcctcgaagggacagtgtctctagttctagacatcat
caaccttcaccatcccctatgtttcttggtgcctcacctgatacacgattggtttctcca
tggtcaggaggcaatactccttattcttcttctccatgggaccatgtgtctccatctcct
gttccaatacgtgcttctggatcttcagtcaaatcttctacttctagacatagtggaagg
tcccatcaacttactttttcttcgggagcttcaagttcgtatgaggatgaagtgactgat
aagtccgagtttggcgaagaacacaagtatgagattactgaaagcatgcgcgcagagatg
gaatatgatgctgaccgggcatggtatgatagagaggaaggtagcacaatgttcgatgga
ggagataactcatcactttttcttggagatgaggctacctttcaaaaaaaagaggctgag
cttgccaaaagactgactagaagagatgggaccaagatgtcccttgctcagagcaagaag
ttgtctcagctcacagctgataatgctcaatgggaggacagacaactgctgagatcagga
gccgttagaggtacagaggttcagactgagtttgatgatgaggaagaacgcaaagttatt
cttctggtgcatgatacaaaacctccattccttgatggcagagttgtttttactaagcag
gcagagccaattatgccaataaaagatccaacatctgacatggctataatttctcgtaaa
ggatctactctggtcagagaaatacgtgagaaacagagttcaaataagtctcgccaacgt
ttttgggagcttgcaggctcaaaacttggcgatatcttaggtgttgaaaagacagcagaa
cagattgatgcagacactgctacagtgggtgaacagggtgaaatagattttaaggaagaa
gctaagttttcacagcatttgaaaaaggaagaggctgtgagtgattttgccaagtcaaag
agtattgcagagcaaaggcaatatctgcccattttttcagtgcgagatgacctattacag
gtaattcgagaaaatcagatcgtcgtagtggttggagaaactggctcaggaaagacaacc
caattgacacagtatctgcatgaggatggctacactataaaaggtatagtaggttgcacc
caacccaggcgtgtggcagctatgagtgtggccaagagagtcagtgaggagatggagaca
gagctgggtgagaaggttggctatgctatacggtttgaggatgtgactgggccaaatacc
attataaagtacatgacagatggggttcttctacgagaaacactcaaagactctgatcta
gacaagtatcgggttattgtcatggatgaagcccatgaaagatcattaaacacggatgtt
ctttttggaatattgaagaaagttgtagctcgacgtcgtgattttaagttgattgtcaca
tcagcaactctgaatgcacagaaattttcacatttctttggaagtgtgccaatttataat
attcctgggagaacatttcctgtgactacattatggagtaaaactccagttgaagattat
gttgaaggtgcagtgaagcaggccatgacgattcacattactagtcctccaggtgacatt
cttatcttcatgactggccaagatgagattgaggcggcttgctacgcccttgcagaaaga
atggagcagatggtctcttcttcaaagaaagcagtccctaaactcttgattctacccata
tactctcagctnnnnnnnnnnnnncaggctaagatattccagagagctgaagatggagcc
cgaaaatgcatcgttgccactaacatcgctgagacatcattgactgtggacggtatcttc
tatgtcatagacacaggttatggtaaaatgaaggtgtataacccaaggatgggtatggac
gctctccaagtcttccccgtcagccgtgctgctgctgatcagcgtgctggtcgagctggt
agaactgggcctggtacatgttatcgactgtacacagagagtgcttacctaaatgaaatg
ttgcccagtcctgtccctgagattcaaaggactaacctcggcaatgtggtcttgttgctg
aaatctcttaaagttgagaatttacttgattttgatttcatggatccacctccgcaagat
aatattctcaattctatgtaccagttgtgggtattgggtgcccttaacaatgtgggtgcc
ttaacagatcttggctggaaaatggttgagtttccactggaccctccacttgctaagatg
cttttgatgggtgaacagctggggtgccttgaggaggttctgacaattgtttccatgctt
tcagtaccgtcagttttctttagacccaaggaccgagtagaggagagtgatgctgcacgc
gaaagattttttgtgccagaatctgatcacttaaccctgtacaatgtctatcagcaatgg
aaacagcatgattacagaggtgactggtgtaatgatcattttttgcatgttaaaggtcta
agaaaggccagagaggtgagatcccagctgcttgatattctcaagacactgaagatctct
ctaaccacctgttggcctgatacagacatagtcagaaaagcaatttgctcagcatacttc
cacaatgcagcaagattaaagggtgttggagagtatgtcaactgccggactgggatgccg
tgtcatctacaccccagtagcgcactctatggcatgggtgcaactccggagtatgtggtt
tatcacgagttaatcctaaccacgaaggagtatatgcaatgtgctacagccgtggagccc
cagtggttggctgagcttggacccatgtttttctctgttaaggagtctgatacatcattg
ctggagcataagaagaaacagaaacaagagaagacggccatggaggaggagatggagaat
ttgaagaagatgcaagcagagattgagagaaaacagaagcaggaggagaaagaaaagttg
gctaagcagcaacagcaagtctccatgccaggtttgaaaaagggctcttccacatacttg
agaccaaagaaacttggtttgtaa
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