Arachis ipaensis: 107613477
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Entry
107613477 CDS
T04301
Name
(RefSeq) probable CCR4-associated factor 1 homolog 9
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
aip
Arachis ipaensis
Pathway
aip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107613477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aip03019
]
107613477
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107613477
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107613477
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
ScoMcrA_N
DUF4857
Motif
Other DBs
NCBI-GeneID:
107613477
NCBI-ProteinID:
XP_016170972
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All DBs
Position
B08:5871167..5872391
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AA seq
285 aa
AA seq
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MGVAIEDETKPKPIVIREVWASNLESEFELIREVIDNYPFISMDTEFPGVIFRPQPTDPS
NPYLGRRLSPSDHYLLLKSNVDALNLIQVGLTLSDENGNLPDLGTGNRYIWEFNFSDFDL
ARDAHAPDSIELLRCQGIDFRRNAEDGVESRRFAELMMSSGMVCNDAVSWVTFHSAYDFG
YLVKILTRRALPNGLEEFLRVLRVFFGDNVYDVKHMMRYCKALYGGLDRVARTLNVDRAV
GKCHQAGSDSLLTWHAFQRMRDIYFVNDGPQKHAGVLFGLEMPCS
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtggccattgaagatgaaacgaaacccaagcccatcgtcatccgtgaggtgtgg
gcctccaatttggaatccgaatttgaactcatcagagaagtcatcgataactaccccttc
atttccatggacacggagttccccggagtaatcttccgtccgcagcctacagatccgtcc
aacccttacctcgggcgacgcctcagcccctccgatcactacctcctcctcaagtccaac
gtcgacgcactcaacctcatccaagttggactcactctatccgacgagaacggcaaccta
ccggatctcggcaccggtaaccgctatatctgggagttcaacttcagcgactttgatctg
gcgcgtgacgcacacgcccctgactcgatcgagctgctccgctgccagggcatcgatttc
cggcgcaacgccgaagacggtgtggagtcaaggcggttcgcggagctgatgatgtcgtcg
gggatggtgtgcaacgacgccgtgagctgggtaacgttccacagcgcttacgatttcggg
tacttggttaagatcttgacccgaagggcgttaccaaacgggttggaagagttcttgcgg
gttctgagggttttcttcggtgataacgtttacgatgtgaaacacatgatgaggtactgt
aaggccctctatggcggtttggatcgggtcgcccgaaccttgaatgtggatcgggccgtc
ggtaagtgccaccaggccggctctgatagcttgctgacgtggcacgcgtttcagaggatg
cgtgatatttatttcgtcaatgatgggccccagaagcacgccggcgtcttgttcggcttg
gaaatgccttgttcataa
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